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    • Showing Current items.

    clec-87 C-type lectin domain-containing protein 87 [ Caenorhabditis elegans ]

    Gene ID: 172885, updated on 2-Nov-2024

    Summary

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    Official Symbol
    clec-87
    Official Full Name
    C-type lectin domain-containing protein 87
    Primary source
    WormBase:WBGene00007709
    Locus tag
    CELE_C25A1.8
    See related
    AllianceGenome:WB:WBGene00007709
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane. Orthologous to human CLEC2L (C-type lectin domain family 2 member L); KLRB1 (killer cell lectin like receptor B1); and KLRG1 (killer cell lectin like receptor G1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See clec-87 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (10184462..10185520, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Putative H/ACA ribonucleoprotein complex subunit 3 Neighboring gene Proteasome assembly chaperone 3 Neighboring gene isoleucine--tRNA ligase Neighboring gene Serine/threonine-protein phosphatase 2A regulatory subunit rsa-1 Neighboring gene Nucleolar protein dao-5 Neighboring gene AB hydrolase-1 domain-containing protein;Abhydrolase domain-containing protein lid-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Establishment of a Caenorhabditis elegans infection model for Vibrio alginolyticus. Durai S, et al. J Basic Microbiol, 2011 Jun. PMID 21298688
    2. Caenorhabditis elegans as a model for studying Cronobacter sakazakii ATCC BAA-894 pathogenesis. Sivamaruthi BS, et al. J Basic Microbiol, 2011 Oct. PMID 21656805
    3. Regulation of Caenorhabditis elegans and Pseudomonas aeruginosa machinery during interactions. Vigneshkumar B, et al. Arch Microbiol, 2012 Apr. PMID 21909805
    4. Changes in Caenorhabditis elegans exposed to Vibrio parahaemolyticus. Durai S, et al. J Microbiol Biotechnol, 2011 Oct. PMID 22031026
    5. Characterizing the type 6 secretion system (T6SS) of E. cloacae SBP-8 and its role in pathogenesis and bacterial competition. Khan S, et al. Microb Pathog, 2023 Oct. PMID 37536636

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables pattern recognition receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin domain-containing protein 87
    NP_492682.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      10184462..10185520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060281.6 → NP_492682.1  C-type lectin domain-containing protein 87 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492682.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XVS3
      Conserved Domains (1) summary
      pfam00059
      Location:107 → 224
      Lectin_C; Lectin C-type domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XVS3.1

    Gene LinkOut

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