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    nsl1 NSL1 component of MIS12 kinetochore complex [ Danio rerio (zebrafish) ]

    Gene ID: 562522, updated on 2-Nov-2024

    Summary

    Official Symbol
    nsl1provided by ZNC
    Official Full Name
    NSL1 component of MIS12 kinetochore complexprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041014-362
    See related
    Ensembl:ENSDARG00000024471 AllianceGenome:ZFIN:ZDB-GENE-041014-362
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-147d7.3
    Summary
    Predicted to act upstream of or within mitotic sister chromatid segregation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human NSL1 (NSL1 component of MIS12 kinetochore complex). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See nsl1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (37814464..37820929, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (37911585..37918050, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene activating transcription factor 3 Neighboring gene basic leucine zipper transcription factor, ATF-like 3 Neighboring gene TatD DNase domain containing 3 Neighboring gene spermatogenesis associated 45

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    kinetochore-associated protein NSL1 homolog
    Names
    NSL1, MIND kinetochore complex component, homolog
    NSL1, MIS12 kinetochore complex component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025521.2NP_001020692.1  kinetochore-associated protein NSL1 homolog

      See identical proteins and their annotated locations for NP_001020692.1

      Status: PROVISIONAL

      Source sequence(s)
      BC115062
      UniProtKB/TrEMBL
      A4FUK4, Q5RGS8
      Related
      ENSDARP00000030404.8, ENSDART00000032978.10
      Conserved Domains (1) summary
      pfam08641
      Location:61173
      Mis14; Kinetochore protein Mis14 like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      37814464..37820929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)