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    clec3ba C-type lectin domain family 3, member Ba [ Danio rerio (zebrafish) ]

    Gene ID: 572488, updated on 2-Nov-2024

    Summary

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    Official Symbol
    clec3baprovided by ZNC
    Official Full Name
    C-type lectin domain family 3, member Baprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110411-71
    See related
    Ensembl:ENSDARG00000076541 AllianceGenome:ZFIN:ZDB-GENE-110411-71
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    clec3b; si:dkey-288i20.3
    Summary
    Predicted to be involved in bone mineralization. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in osteoarthritis and retinal macular dystrophy 4. Orthologous to human CLEC3B (C-type lectin domain family 3 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See clec3ba in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (2833455..2844199)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (2595794..2606533)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 2 Neighboring gene acyl-CoA thioesterase 22 Neighboring gene fasciculation and elongation protein zeta 2a Neighboring gene CUB domain containing protein 1a Neighboring gene transmembrane protein 158

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in bone mineralization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ossification IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tetranectin
    Names
    C-type lectin domain family 3, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      2833455..2844199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466804.2 → XP_021322479.2  tetranectin

      Related
      ENSDARP00000098343.2, ENSDART00000108735.3
    Nucleotide Protein Strain
    Heading Accession and Version

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