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    si:ch211-209a2.2 si:ch211-209a2.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100006732, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-209a2.2provided by ZNC
    Official Full Name
    si:ch211-209a2.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060526-99
    See related
    AllianceGenome:ZFIN:ZDB-GENE-060526-99
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable asparaginase activity. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:ch211-209a2.2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (61336781..61348200, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (60652060..60660268, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 248 Neighboring gene double C2-like domains, beta Neighboring gene si:ch211-209a2.1 Neighboring gene cytosolic arginine sensor for mTORC1 subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    L-asparaginase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      61336781..61348200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476661.1 → XP_021332336.1  L-asparaginase

      UniProtKB/TrEMBL
      A0A8M9Q9U3
      Conserved Domains (2) summary
      cd00204
      Location:19 → 82
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:29 → 60
      ANK; ANK repeat [structural motif]

    2. XM_009301904.3 → XP_009300179.1  L-asparaginase

      UniProtKB/TrEMBL
      A0A8M9Q9U3
      Conserved Domains (2) summary
      cd00204
      Location:19 → 82
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:29 → 60
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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