U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:dkey-56m19.5 si:dkey-56m19.5 [ Danio rerio (zebrafish) ]

    Gene ID: 797705, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:dkey-56m19.5provided by ZNC
    Official Full Name
    si:dkey-56m19.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-226
    See related
    Ensembl:ENSDARG00000068432 AllianceGenome:ZFIN:ZDB-GENE-030131-226
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb913; fb17g07; fd60a06; im:7000443; wu:fb17g07; wu:fd60a06
    Summary
    Is expressed in several structures, including intermediate cell mass of mesoderm; nervous system; neural tube; notochord; and pronephric duct. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:dkey-56m19.5 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (44713135..44717498)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (44373821..44378273)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CKLF-like MARVEL transmembrane domain containing 4 Neighboring gene uncharacterized LOC103911411 Neighboring gene dynein, cytoplasmic 1, light intermediate chain 2 Neighboring gene uncharacterized LOC108190699 Neighboring gene nedd8 activating enzyme E1 subunit 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia. Issaka Salia O, et al. BMC Genomics, 2020 Dec 7. PMID 33287696, Free PMC Article
    2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    calphotin; uncharacterized protein LOC797705

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      44713135..44717498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477943.2 → XP_021333618.1  calphotin

      UniProtKB/TrEMBL
      A0A140LG11, A0A8M1RHC9
      Related
      ENSDARP00000142188.1, ENSDART00000170721.3
      Conserved Domains (1) summary
      cl26557
      Location:84 → 257
      RNase_E_G; Ribonuclease E/G family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394706.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      206466..210829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002662871.5 → XP_002662917.1  calphotin

      UniProtKB/TrEMBL
      A0A140LG11, A0A8M1RHC9
      Conserved Domains (1) summary
      cl26557
      Location:84 → 257
      RNase_E_G; Ribonuclease E/G family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.