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    LINC02492 long intergenic non-protein coding RNA 2492 [ Homo sapiens (human) ]

    Gene ID: 100506272, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02492provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2492provided by HGNC
    Primary source
    HGNC:HGNC:53476
    See related
    Ensembl:ENSG00000250590 AllianceGenome:HGNC:53476
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02492 in Genome Data Viewer
    Location:
    4q35.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (187532878..187672641, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (190880447..191020438, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (188454032..188593795, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC339975 Neighboring gene long intergenic non-protein coding RNA 2515 Neighboring gene COPS3 pseudogene 1 Neighboring gene uncharacterized LOC105377604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:188486253-188486754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:188486755-188487254 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:188523188-188524387 Neighboring gene uncharacterized LOC124900879 Neighboring gene uncharacterized LOC105377603 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:188592460-188593659 Neighboring gene uncharacterized LOC107983963 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:188665573-188666772 Neighboring gene ADAM metallopeptidase domain 20 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:188710078-188710674 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:188784615-188785814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:188850326-188850826 Neighboring gene uncharacterized LOC124900880

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110436.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC097521, BX108713
      Related
      ENST00000507817.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      187532878..187672641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      190880447..191020438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials