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    C030006K11Rik RIKEN cDNA C030006K11 gene [ Mus musculus (house mouse) ]

    Gene ID: 223665, updated on 28-Oct-2024

    Summary

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    Official Symbol
    C030006K11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C030006K11 geneprovided by MGI
    Primary source
    MGI:MGI:1925941
    See related
    Ensembl:ENSMUSG00000116138 AllianceGenome:MGI:1925941
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110033I13Rik
    Summary
    Located in mitochondrion. Orthologous to human C8orf82 (chromosome 8 open reading frame 82). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in adrenal adult (RPKM 114.7), mammary gland adult (RPKM 36.1) and 17 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See C030006K11Rik in Genome Data Viewer
    Location:
    15 D3; 15 36.28 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76605665..76608045, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76721465..76723845, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7385 Neighboring gene major facilitator superfamily domain containing 3 Neighboring gene RecQ protein-like 4 Neighboring gene leucine rich repeat containing 14 Neighboring gene leucine rich repeat containing 24 Neighboring gene Rho GTPase activating protein 39 Neighboring gene STARR-positive B cell enhancer mm9_chr15:76600695-76600996 Neighboring gene predicted gene, 17271 Neighboring gene STARR-positive B cell enhancer ABC_E8939 Neighboring gene STARR-seq mESC enhancer starr_39062 Neighboring gene predicted gene, 41350

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC38904

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    UPF0598 protein C8orf82 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145472.2 → NP_663447.1  UPF0598 protein C8orf82 homolog isoform 1

      See identical proteins and their annotated locations for NP_663447.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
      Source sequence(s)
      AK140578, AK165937, BC026997
      Consensus CDS
      CCDS27591.1
      UniProtKB/Swiss-Prot
      Q8BK86, Q8VE95
      Related
      ENSMUSP00000039910.9, ENSMUST00000036247.10
      Conserved Domains (1) summary
      pfam14956
      Location:31 → 207
      DUF4505; Domain of unknown function (DUF4505)

    2. NM_176828.4 → NP_789798.2  UPF0598 protein C8orf82 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses a different splice site in the 5' coding region compared to variant 1, that results in a frameshift. It encodes isoform 2, which has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK140578, BC026997
      UniProtKB/Swiss-Prot
      Q8VE95
      Related
      ENSMUST00000231059.2
      Conserved Domains (1) summary
      pfam14956
      Location:31 → 57
      DUF4505; Domain of unknown function (DUF4505)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      76605665..76608045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VE95.1 GenPept UniProtKB/Swiss-Prot:Q8VE95

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