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    MGC83521 putative deoxyribonuclease tatdn3-B [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444074, updated on 18-Aug-2023

    Summary

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    Gene symbol
    MGC83521
    Gene description
    putative deoxyribonuclease tatdn3-B
    Locus tag
    XELAEV_18028692mg
    See related
    EnsemblRapid:ENSXLAG00005002194
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tatdn3-B
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    Genomic context

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    See MGC83521 in Genome Data Viewer
    Location:
    chromosome: 5S
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (17125349..17137293, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (17164081..17176070, complement)

    Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene vasohibin 2 S homeolog Neighboring gene uncharacterized LOC108717715 Neighboring gene FLVCR choline and heme transporter 1 S homeolog Neighboring gene flocculation protein FLO11 Neighboring gene basic leucine zipper transcription factor, ATF-like 3 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative deoxyribonuclease tatdn3-B
    NP_001085648.1
    XP_018119900.1
    XP_018119901.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092179.1 → NP_001085648.1  putative deoxyribonuclease tatdn3-B

      See identical proteins and their annotated locations for NP_001085648.1

      Status: PROVISIONAL

      Source sequence(s)
      BC073091
      UniProtKB/Swiss-Prot
      Q6GPM3
      UniProtKB/TrEMBL
      A0A974HH09
      Conserved Domains (1) summary
      cd01310
      Location:7 → 246
      TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      17125349..17137293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018264412.2 → XP_018119901.1  putative deoxyribonuclease tatdn3-B isoform X2

      UniProtKB/TrEMBL
      A0A8J0VAD7, A0A974HH09

    2. XM_018264411.2 → XP_018119900.1  putative deoxyribonuclease tatdn3-B isoform X1

      UniProtKB/TrEMBL
      A0A1L8G1B1, A0A974CRX8, A0A974HH09
      Related
      ENSXLAP00005006597.1, ENSXLAT00005006706.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GPM3.1 GenPept UniProtKB/Swiss-Prot:Q6GPM3

    Gene LinkOut

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