slc16a9a solute carrier family 16 member 9a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc16a9aprovided by ZNC
Official Full Name: solute carrier family 16 member 9aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1364
See related: Ensembl:ENSDARG00000013926 AllianceGenome:ZFIN:ZDB-GENE-040426-1364
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:64089
Summary: Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in carboxylic acid transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adenohypophysis; brain; and pars anterior. Orthologous to human SLC16A9 (solute carrier family 16 member 9). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (20653773..20666644, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (20633937..20648795, complement)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj78d03.y1 (e-PCR)
- UniSTS:199893

fj05b03.x1 (e-PCR)
- UniSTS:198382

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables monocarboxylic acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in carboxylic acid transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: monocarboxylate transporter 9a

Names: solute carrier family 16 (monocarboxylic acid transporters), member 9a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200410.1 → NP_956704.1 monocarboxylate transporter 9a

See identical proteins and their annotated locations for NP_956704.1

Status: PROVISIONAL

Source sequence(s)

BC054615

UniProtKB/TrEMBL

Q7T2B4

Related

ENSDARP00000003362.8, ENSDART00000020167.11

Conserved Domains (2) summary

cd06174
Location:19 → 473

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

TIGR00892
Location:11 → 493

2A0113; monocarboxylate transporter 1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007128.7 Reference GRCz11 Primary Assembly

Range

20653773..20666644 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021467242.2 → XP_021322917.1 monocarboxylate transporter 9a isoform X1

UniProtKB/TrEMBL

A0A8M9P097

Conserved Domains (1) summary

cl26868
Location:11 → 493

2A0111; oxalate/formate antiporter family transporter