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    PARD6G-AS1 PARD6G antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100130522, updated on 17-Sep-2024

    Summary

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    Official Symbol
    PARD6G-AS1provided by HGNC
    Official Full Name
    PARD6G antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44109
    See related
    Ensembl:ENSG00000267270 AllianceGenome:HGNC:44109
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See PARD6G-AS1 in Genome Data Viewer
    Location:
    18q23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (80147924..80178432)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (80424381..80454890)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (77905807..77936315)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene RBFA downstream neighbor Neighboring gene solute carrier family 25 member 6 pseudogene 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:77861530-77862273 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:77865569-77866070 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:77866897-77867398 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9592 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:77876558-77877483 Neighboring gene ADNP homeobox 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13550 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9594 Neighboring gene par-6 family cell polarity regulator gamma Neighboring gene uncharacterized LOC124904337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:77985669-77986170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:78003535-78004036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:78004037-78004536 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13551

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Maternal 5mCpG imprints at the PARD6G-AS1 gametic (primary) differentially methylated region (iDMR) are decoupled from parent-of-origin expression effects in multiple human tissues. Despite the constitutive methylation asymmetry observed between the parental alleles at the iDMR, PARD6G-AS1 was expressed biallelically in six tissues: brain amygdala, brain putamen, heart atrial appendage, pituitary, testis, and thyroid.
      Title: Maternal 5(m)CpG Imprints at the PARD6G-AS1 and GCSAML Differentially Methylated Regions Are Decoupled From Parent-of-Origin Expression Effects in Multiple Human Tissues.
    2. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
      Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • PARD6G antisense RNA 1 (non-protein coding)

    Clone Names

    • FLJ31742, AC139100.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028339.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC139100, AK056304, BM665099, DA492465
      Related
      ENST00000586421.1

    2. NR_028340.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two exons and includes two alternate exons, compared to variant 1.
      Source sequence(s)
      DA492465, DB097435, DR003590
      Related
      ENST00000589574.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      80147924..80178432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      80424381..80454890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001145731.1: Suppressed sequence

      Description
      NM_001145731.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.

    2. NM_001145732.1: Suppressed sequence

      Description
      NM_001145732.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.

    3. NM_001145733.1: Suppressed sequence

      Description
      NM_001145733.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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