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    EFCAB2-AS1 EFCAB2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928068, updated on 21-Sep-2024

    Summary

    Official Symbol
    EFCAB2-AS1provided by HGNC
    Official Full Name
    EFCAB2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:58101
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 1.6), small intestine (RPKM 0.8) and 23 other tissues See more
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    Genomic context

    See EFCAB2-AS1 in Genome Data Viewer
    Location:
    1q44
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (244965204..244970869, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (244381866..244387505, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (245128506..245134171, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 55 Neighboring gene RNA, U6 small nuclear 947, pseudogene Neighboring gene uncharacterized LOC124900416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:245131334-245131838 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2024 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2026 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2849 Neighboring gene EF-hand calcium binding domain 2 Neighboring gene uncharacterized LOC107985725 Neighboring gene RNA, U6 small nuclear 1089, pseudogene Neighboring gene RNA, U6 small nuclear 999, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_111907.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356512

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      244965204..244970869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      244381866..244387505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)