C13h1orf115 similar to human chromosome 1 open reading frame 115 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: C13h1orf115provided by RGD
Official Full Name: similar to human chromosome 1 open reading frame 115provided by RGD
Primary source: RGD:1310587
See related: AllianceGenome:RGD:1310587
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1310587
Summary: Predicted to be located in 9+0 non-motile cilium. Orthologous to human C1orf115 (chromosome 1 open reading frame 115). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Liver (RPKM 82.4), Kidney (RPKM 74.3) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 13q26

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	13	NC_086031.1 (98953841..98963577, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	13	NC_051348.1 (96422308..96432044, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	13	NC_005112.4 (102780885..102790621, complement)

Chromosome 13 - NC_086031.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH132582 (e-PCR)
- UniSTS:215865

AU026109 (e-PCR)
- UniSTS:114603

RH139065 (e-PCR)
- UniSTS:221151

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in regulation of response to drug	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in 9+0 non-motile cilium	ISO Inferred from Sequence Orthology more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: required for drug-induced death protein 1

Names: uncharacterized protein C1orf115 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100857.1 → NP_001094327.1 required for drug-induced death protein 1

See identical proteins and their annotated locations for NP_001094327.1

Status: VALIDATED

Source sequence(s)

BC100157

UniProtKB/Swiss-Prot

Q3ZCQ0

UniProtKB/TrEMBL

A6JGP9

Conserved Domains (1) summary

pfam15828
Location:61 → 131

DUF4710; Domain of unknown function (DUF4710)