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    zfr.S zinc finger RNA binding protein S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 399224, updated on 18-Sep-2024

    Summary

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    Official Symbol
    zfr.S
    Official Full Name
    zinc finger RNA binding protein S homeolog
    Primary source
    Xenbase:XB-GENE-6067516
    Locus tag
    XELAEV_18011038mg
    See related
    EnsemblRapid:ENSXLAG00005001587
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    zfr
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See zfr.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (188595415..188646770)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (168794110..168845780)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene natriuretic peptide receptor 3 S homeolog Neighboring gene small nucleolar RNA SNORA66 Neighboring gene small nucleolar RNA SNORA66 Neighboring gene SUB1 homolog, transcriptional regulator S homeolog Neighboring gene small nucleolar RNA SNORA66 Neighboring gene small nucleolar RNA SNORA66 Neighboring gene uncharacterized LOC121399538 Neighboring gene golgi phosphoprotein 3 (coat-protein) S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001090507.1 → NP_001083976.1  zinc finger RNA-binding protein

      See identical proteins and their annotated locations for NP_001083976.1

      Status: PROVISIONAL

      Source sequence(s)
      BC073093
      UniProtKB/Swiss-Prot
      Q6GPM1, Q8AVI6
      UniProtKB/TrEMBL
      A0A974DVP3, A0A974E2I0
      Related
      ENSXLAP00005004759.1, ENSXLAT00005004856.1
      Conserved Domains (3) summary
      smart00572
      Location:764 → 1018
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00451
      Location:561 → 592
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:324 → 346
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      188595415..188646770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GPM1.1 GenPept UniProtKB/Swiss-Prot:Q6GPM1

    Gene LinkOut

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