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    Fam47c family with sequence similarity 47, member C [ Mus musculus (house mouse) ]

    Gene ID: 70864, updated on 2-Nov-2024

    Summary

    Official Symbol
    Fam47cprovided by MGI
    Official Full Name
    family with sequence similarity 47, member Cprovided by MGI
    Primary source
    MGI:MGI:1918114
    See related
    Ensembl:ENSMUSG00000078315 AllianceGenome:MGI:1918114
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam47a; Fam47a-ps; 4921509A18Rik
    Summary
    Predicted to be involved in transcription initiation-coupled chromatin remodeling. Predicted to be located in chromatin. Orthologous to several human genes including FAM47A (family with sequence similarity 47 member A) and FAM47C (family with sequence similarity 47 member C). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See Fam47c in Genome Data Viewer
    Location:
    X B; X 38.35 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (77781369..77783016)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (78737763..78739410)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ring finger protein 41 pseudogene Neighboring gene actin, beta pseudogene Neighboring gene STARR-seq mESC enhancer starr_47427 Neighboring gene STARR-seq mESC enhancer starr_47428 Neighboring gene SET domain-containing protein 8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47429 Neighboring gene STARR-seq mESC enhancer starr_47430 Neighboring gene STARR-seq mESC enhancer starr_47431 Neighboring gene zinc finger CCCH-type containing 18 pseudogene

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC144831

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in transcription initiation-coupled chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC70864
    Names
    family with sequence similarity 47, member A, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164739.1NP_001158211.1  uncharacterized protein LOC70864

      See identical proteins and their annotated locations for NP_001158211.1

      Status: VALIDATED

      Source sequence(s)
      AL671900
      Consensus CDS
      CCDS59771.1
      UniProtKB/TrEMBL
      Q14BE7
      Related
      ENSMUSP00000137737.2, ENSMUST00000105110.4
      Conserved Domains (1) summary
      pfam14642
      Location:1178
      FAM47; FAM47 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      77781369..77783016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)