U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    2310057J18Rik RIKEN cDNA 2310057J18 gene [ Mus musculus (house mouse) ]

    Gene ID: 67719, updated on 2-Nov-2024

    Summary

    Official Symbol
    2310057J18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310057J18 geneprovided by MGI
    Primary source
    MGI:MGI:1914969
    See related
    Ensembl:ENSMUSG00000015519 AllianceGenome:MGI:1914969
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Leg1; 2210414P04Rik
    Summary
    Predicted to be active in extracellular space. Orthologous to human C6orf58 (chromosome 6 open reading frame 58). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward duodenum adult (RPKM 6.6) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 2310057J18Rik in Genome Data Viewer
    Location:
    10 A4; 10 16.46 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (28848284..28862302, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (28972288..28986306, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_26169 Neighboring gene thymocyte selection associated Neighboring gene STARR-seq mESC enhancer starr_26170 Neighboring gene pyruvate dehydrogenase E1 alpha 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26171 Neighboring gene splicing factor 3b, subunit 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26172 Neighboring gene phosphatidylethanolamine-binding protein pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein LEG1 homolog
    Names
    UPF0762 protein C6orf58 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026336.3NP_080612.1  protein LEG1 homolog precursor

      See identical proteins and their annotated locations for NP_080612.1

      Status: VALIDATED

      Source sequence(s)
      AK008932, AK009921, AK010222
      Consensus CDS
      CCDS23759.1
      UniProtKB/Swiss-Prot
      Q8C6C9, Q8C6D2, Q8C6D6, Q8VDJ0, Q9CPV8, Q9CQ55, Q9D6S4, Q9D745, Q9D775, Q9D7F4, Q9D865
      Related
      ENSMUSP00000015663.7, ENSMUST00000015663.7
      Conserved Domains (1) summary
      pfam05612
      Location:30322
      DUF781; Mouse protein of unknown function (DUF781)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      28848284..28862302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)