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    Gm38431 predicted gene, 38431 [ Mus musculus (house mouse) ]

    Gene ID: 100568458, updated on 9-Aug-2024

    Summary

    Official Symbol
    Gm38431provided by MGI
    Official Full Name
    predicted gene, 38431provided by MGI
    Primary source
    MGI:MGI:5621316
    See related
    AllianceGenome:MGI:5621316
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Raver1; Raver1-fdx1l
    Summary
    This gene represents a read-through transcript composed of Raver1 and Fdx1l sequence. This transcript is thought to be non-coding because it would be subject to nonsense-mediated mRNA decay (NMD). [provided by RefSeq, Apr 2011]
    Expression
    Ubiquitous expression in thymus adult (RPKM 81.3), duodenum adult (RPKM 66.9) and 28 other tissues See more
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    Genomic context

    See Gm38431 in Genome Data Viewer
    Location:
    9 A3; 9
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (20978810..21003304, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21067514..21092008, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26592 Neighboring gene intercellular adhesion molecule 5, telencephalin Neighboring gene zinc finger, GATA-like protein 1 Neighboring gene ferredoxin 2 Neighboring gene microRNA 7082 Neighboring gene ribonucleoprotein, PTB-binding 1 Neighboring gene STARR-positive B cell enhancer ABC_E459 Neighboring gene tyrosine kinase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1780 Neighboring gene STARR-positive B cell enhancer ABC_E2282 Neighboring gene STARR-positive B cell enhancer ABC_E5054 Neighboring gene cell division cycle 37 Neighboring gene predicted gene, 36118

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Readthrough Gm38431

    Included genes: Fdx2, Raver1

    Other Names

    • Protein raver-1
    • Raver1-Fdx1l readthrough
    • Ribonucleoprotein PTB-binding 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038081.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163637, AK004919

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      20978810..21003304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)