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    LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345779, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345779
    Gene description
    protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like
    Locus tag
    OSNPB_080463900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 93.7), roots after flowering (RPKM 48.4) and 3 other tissues See more
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    Genomic context

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    See LOC4345779 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (22912343..22914426)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22772958..22775132)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 8 Neighboring gene uncharacterized LOC136351598 Neighboring gene small nucleolar RNA U31b Neighboring gene small nucleolar RNA snoR117

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like
    Names
    B1111C03.36
    B1116H04.24
    Os08g0463900
    protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      22912343..22914426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794871.3 → XP_015650357.1  protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like

      UniProtKB/Swiss-Prot
      Q6YUA8
      UniProtKB/TrEMBL
      B8BBL7
      Conserved Domains (2) summary
      PRK14298
      Location:103 → 158
      PRK14298; chaperone protein DnaJ; Provisional
      PRK14280
      Location:56 → 148
      PRK14280; molecular chaperone DnaJ
    Nucleotide Protein
    Heading Accession and Version

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