U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tssk4 testis-specific serine kinase 4 [ Mus musculus (house mouse) ]

    Gene ID: 71099, updated on 2-Nov-2024

    Summary

    Official Symbol
    Tssk4provided by MGI
    Official Full Name
    testis-specific serine kinase 4provided by MGI
    Primary source
    MGI:MGI:1918349
    See related
    Ensembl:ENSMUSG00000007591 AllianceGenome:MGI:1918349
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TSK-4; TSSK-4; 1700020B19Rik; 4933424F08Rik
    Summary
    Enables magnesium ion binding activity; protein homodimerization activity; and protein serine/threonine kinase activity. Involved in several processes, including flagellated sperm motility; positive regulation of CREB transcription factor activity; and protein phosphorylation. Located in sperm flagellum. Orthologous to human TSSK4 (testis specific serine kinase 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 29.3) and genital fat pad adult (RPKM 1.3) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tssk4 in Genome Data Viewer
    Location:
    14 C3; 14 28.19 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (55880893..55889996)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (55643651..55652539)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene REC8 meiotic recombination protein Neighboring gene importin 4 Neighboring gene transmembrane 9 superfamily member 1 Neighboring gene magnesium-dependent phosphatase 1 Neighboring gene neural precursor cell expressed, developmentally down-regulated gene 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ATP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables histone H2AS1 kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables magnesium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables magnesium ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein serine/threonine kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables protein serine/threonine kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein-containing complex binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in acrosomal vesicle TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in motile cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in sperm flagellum IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    General protein information

    Preferred Names
    testis-specific serine/threonine-protein kinase 4
    Names
    testis-specific kinase 4
    testis-specific serine/threonine protein kinase 5 variant alpha
    testis-specific serine/threonine protein kinase 5 variant beta
    testis-specific serine/threonine protein kinase 5 variant delta
    testis-specific serine/threonine protein kinase 5 variant gamma
    NP_001240817.1
    NP_001240818.1
    NP_081949.1
    XP_006519614.1
    XP_006519615.1
    XP_036014742.1
    XP_036014743.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001253888.1NP_001240817.1  testis-specific serine/threonine-protein kinase 4 isoform 3

      See identical proteins and their annotated locations for NP_001240817.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice site in the coding region, compared to variant 1. This results in a longer protein (isoform 3), compared to isoform 1.
      Source sequence(s)
      AC174678
      Consensus CDS
      CCDS88669.1
      UniProtKB/TrEMBL
      A0A2I3BQS0
      Related
      ENSMUSP00000154783.2, ENSMUST00000228395.2
      Conserved Domains (2) summary
      smart00220
      Location:25303
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14162
      Location:24302
      STKc_TSSK4-like; Catalytic domain of testis-specific serine/threonine kinase 4 and similar proteins
    2. NM_001253889.1NP_001240818.1  testis-specific serine/threonine-protein kinase 4 isoform 4

      See identical proteins and their annotated locations for NP_001240818.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses two alternate in-frame splice sites in the coding region, compared to variant 1. This results in a shorter protein (isoform 3), compared to isoform 1.
      Source sequence(s)
      AC174678, AK006144, AK016890
      Consensus CDS
      CCDS56959.1
      UniProtKB/TrEMBL
      A0A2I3BQS0
      Related
      ENSMUSP00000007735.9, ENSMUST00000007735.9
      Conserved Domains (2) summary
      smart00220
      Location:25278
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:24278
      PKc_like; Protein Kinases, catalytic domain
    3. NM_027673.3NP_081949.1  testis-specific serine/threonine-protein kinase 4 isoform 1

      See identical proteins and their annotated locations for NP_081949.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes isoform (1).
      Source sequence(s)
      AC174678, AK016890
      Consensus CDS
      CCDS88670.1
      UniProtKB/Swiss-Prot
      A3QQQ9, A3QQR0, A3QQR1, A9P6P7, A9P6P9, Q9D411, Q9DA58
      UniProtKB/TrEMBL
      A0A2I3BQE9
      Related
      ENSMUSP00000153752.2, ENSMUST00000226591.2
      Conserved Domains (2) summary
      smart00220
      Location:25293
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14162
      Location:24292
      STKc_TSSK4-like; Catalytic domain of testis-specific serine/threonine kinase 4 and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      55880893..55889996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158850.1XP_036014743.1  testis-specific serine/threonine-protein kinase 4 isoform X4

      Conserved Domains (1) summary
      PHA03247
      Location:12113
      PHA03247; large tegument protein UL36; Provisional
    2. XM_006519551.4XP_006519614.1  testis-specific serine/threonine-protein kinase 4 isoform X1

      Conserved Domains (1) summary
      cl21453
      Location:3230
      PKc_like; Protein Kinases, catalytic domain
    3. XM_036158849.1XP_036014742.1  testis-specific serine/threonine-protein kinase 4 isoform X3

      UniProtKB/TrEMBL
      A0A2I3BQM6
      Conserved Domains (1) summary
      cl21453
      Location:24149
      PKc_like; Protein Kinases, catalytic domain
    4. XM_006519552.1XP_006519615.1  testis-specific serine/threonine-protein kinase 4 isoform X2

      Conserved Domains (1) summary
      cl21453
      Location:46191
      PKc_like; Protein Kinases, catalytic domain