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    Rspo3 R-spondin 3 [ Mus musculus (house mouse) ]

    Gene ID: 72780, updated on 11-Nov-2024

    Summary

    Official Symbol
    Rspo3provided by MGI
    Official Full Name
    R-spondin 3provided by MGI
    Primary source
    MGI:MGI:1920030
    See related
    Ensembl:ENSMUSG00000019880 AllianceGenome:MGI:1920030
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Thsd2; Cristin1; 2810459H04Rik
    Summary
    Enables frizzled binding activity and heparin binding activity. Involved in blood vessel remodeling; positive regulation of non-canonical Wnt signaling pathway; and sprouting angiogenesis. Acts upstream of or within angiogenesis; branching involved in labyrinthine layer morphogenesis; and positive regulation of canonical Wnt signaling pathway. Located in extracellular region. Is expressed in several structures, including embryo ectoderm; genitourinary system; heart; limb; and skeleton. Orthologous to human RSPO3 (R-spondin 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in adrenal adult (RPKM 11.5), ovary adult (RPKM 5.6) and 20 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Rspo3 in Genome Data Viewer
    Location:
    10 A4; 10 16.64 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (29329102..29411863, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (29453106..29535867, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24286 Neighboring gene predicted gene, 18903 Neighboring gene STARR-seq mESC enhancer starr_26178 Neighboring gene STARR-seq mESC enhancer starr_26179 Neighboring gene predicted gene, 46197 Neighboring gene predicted gene, 46219 Neighboring gene Rpl12 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (6)  1 citation

    General gene information

    Markers

    Clone Names

    • MGC118442

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables frizzled binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables frizzled binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables heparin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables signaling receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    R-spondin-3
    Names
    R-spondin 3 homolog
    cabriolet
    cristin 1
    cysteine-rich and single thrombospondin domain-containing protein 1
    nucleopondin
    roof plate-specific spondin-3
    thrombospondin, type I, domain 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028351.3NP_082627.3  R-spondin-3 precursor

      See identical proteins and their annotated locations for NP_082627.3

      Status: VALIDATED

      Source sequence(s)
      AK133916, BC103794
      Consensus CDS
      CCDS23761.1
      UniProtKB/Swiss-Prot
      A6H6M4, Q2TJ95, Q3SYI9, Q5R2V4, Q8BVW2, Q9CSB2
      Related
      ENSMUSP00000090287.4, ENSMUST00000092623.5
      Conserved Domains (3) summary
      smart00209
      Location:151202
      TSP1; Thrombospondin type 1 repeats
      cd00064
      Location:97143
      FU; Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
      pfam15913
      Location:42144
      Furin-like_2; Furin-like repeat, cysteine-rich

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      29329102..29411863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)