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    LOC105372672 uncharacterized LOC105372672 [ Homo sapiens (human) ]

    Gene ID: 105372672, updated on 26-Oct-2024

    Summary

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    Gene symbol
    LOC105372672
    Gene description
    uncharacterized LOC105372672
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.9), placenta (RPKM 0.2) and 1 other tissue See more
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    Genomic context

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    See LOC105372672 in Genome Data Viewer
    Location:
    20q13.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (53608354..53634590)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (55380523..55406752)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (52224893..52251129)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372671 Neighboring gene reporter assay-validated silencer 6 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:52173455-52173955 Neighboring gene ZNF217 antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:52175886-52176069 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:52189693-52189843 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52198379-52199170 Neighboring gene zinc finger protein 217 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13050 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13051 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:52214839-52215339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18123 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:52238084-52238848 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:52243436-52243628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18124 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18125 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18127 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18129 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18130 Neighboring gene RNA, U7 small nuclear 14 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:52307857-52308356 Neighboring gene MPRA-validated peak4269 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18131 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52327852-52328753 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52328754-52329654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52329655-52330556 Neighboring gene MPRA-validated peak4270 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52340879-52341878 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52341879-52342876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:52345091-52345591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18133 Neighboring gene MPRA-validated peak4271 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:52352121-52353026 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52353027-52353930 Neighboring gene uncharacterized LOC124904933 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52353931-52354834 Neighboring gene Sharpr-MPRA regulatory region 8160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Clone Names

    • AC005808.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134576.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005808

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      53608354..53634590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      55380523..55406752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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