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    LOC101928045 uncharacterized LOC101928045 [ Homo sapiens (human) ]

    Gene ID: 101928045, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101928045
    Gene description
    uncharacterized LOC101928045
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101928045 in Genome Data Viewer
    Location:
    17q24.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (67675156..67717678, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (68550710..68593227, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12625 Neighboring gene microRNA 548aa-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12626 Neighboring gene microRNA 548d-2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65515294-65515797 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65515798-65516300 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65516301-65516804 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65516805-65517306 Neighboring gene Sharpr-MPRA regulatory region 6638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65525829-65526481 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65535333-65535834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65535835-65536334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65551665-65552166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65552167-65552666 Neighboring gene uncharacterized LOC124904045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12627 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65595554-65595782 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:65598997-65599506 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65636212-65636398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65651209-65651710 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65715225-65715946 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65717475-65717706 Neighboring gene MPRA-validated peak2955 silencer Neighboring gene Sharpr-MPRA regulatory region 6571 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65747753-65748532 Neighboring gene Sharpr-MPRA regulatory region 8992 Neighboring gene nucleolar protein 11 Neighboring gene small nucleolar RNA, H/ACA box 38B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65764054-65764654 Neighboring gene ribosomal protein SA pseudogene 67

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188292.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006534, AC079331

    2. NR_188293.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006534, AC079331

    3. NR_188294.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006534, AC079331

    4. NR_188295.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006534, AC079331

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      67675156..67717678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      68550710..68593227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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