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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001042752.2 → NP_001036217.1 neogenin isoform 2 precursor
See identical proteins and their annotated locations for NP_001036217.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site and lacks an exon in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
- Source sequence(s)
-
AC110530, CT033754
- Consensus CDS
-
CCDS90582.1
- UniProtKB/TrEMBL
-
Q7TQG5
- Related
- ENSMUSP00000150600.2, ENSMUST00000214547.2
- Conserved Domains (7) summary
-
- cd05722
Location:65 → 159
- Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
- smart00408
Location:274 → 337
- IGc2; Immunoglobulin C-2 Type
- cd05723
Location:368 → 438
- Ig4_Neogenin; Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins
- smart00060
Location:770 → 849
- FN3; Fibronectin type 3 domain
- cd00063
Location:570 → 659
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:352 → 438
- I-set; Immunoglobulin I-set domain
- pfam06583
Location:1162 → 1465
- Neogenin_C; Neogenin C-terminus
-
NM_001408269.1 → NP_001395198.1 neogenin isoform 3 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408270.1 → NP_001395199.1 neogenin isoform 4 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408271.1 → NP_001395200.1 neogenin isoform 5 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408272.1 → NP_001395201.1 neogenin isoform 6 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408273.1 → NP_001395202.1 neogenin isoform 7 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408274.1 → NP_001395203.1 neogenin isoform 8 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408275.1 → NP_001395204.1 neogenin isoform 9 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408276.1 → NP_001395205.1 neogenin isoform 10 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_001408277.1 → NP_001395206.1 neogenin isoform 11 precursor
Status: VALIDATED
- Source sequence(s)
-
AC110530, CT033754
-
NM_008684.3 → NP_032710.2 neogenin isoform 1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest protein (isoform 1).
- Source sequence(s)
-
AC110530, CT033754
- Consensus CDS
-
CCDS23246.1
- UniProtKB/Swiss-Prot
-
P97798
- UniProtKB/TrEMBL
-
E9QK04
- Related
- ENSMUSP00000063656.6, ENSMUST00000068664.7
- Conserved Domains (7) summary
-
- cd05722
Location:65 → 159
- Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
- smart00408
Location:274 → 337
- IGc2; Immunoglobulin C-2 Type
- cd05723
Location:368 → 438
- Ig4_Neogenin; Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins
- smart00060
Location:770 → 849
- FN3; Fibronectin type 3 domain
- cd00063
Location:570 → 659
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:352 → 438
- I-set; Immunoglobulin I-set domain
- pfam06583
Location:1189 → 1492
- Neogenin_C; Neogenin C-terminus
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000075.7 Reference GRCm39 C57BL/6J
- Range
-
58781962..58943926 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036154679.1 → XP_036010572.1 neogenin isoform X14
- Conserved Domains (9) summary
-
- smart00060
Location:750 → 829
- FN3; Fibronectin type 3 domain
- cd00063
Location:550 → 639
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:647 → 732
- fn3; Fibronectin type III domain
- pfam06583
Location:1142 → 1392
- Neogenin_C; Neogenin C-terminus
- pfam07679
Location:261 → 348
- I-set; Immunoglobulin I-set domain
- cd00096
Location:268 → 272
- Ig; Ig strand A' [structural motif]
- cd05722
Location:63 → 159
- IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cd05723
Location:355 → 438
- IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cl11960
Location:163 → 250
- Ig; Immunoglobulin domain
-
XM_036154678.1 → XP_036010571.1 neogenin isoform X13
- Conserved Domains (9) summary
-
- smart00060
Location:750 → 829
- FN3; Fibronectin type 3 domain
- cd00063
Location:550 → 639
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:647 → 732
- fn3; Fibronectin type III domain
- pfam06583
Location:1153 → 1403
- Neogenin_C; Neogenin C-terminus
- pfam07679
Location:261 → 348
- I-set; Immunoglobulin I-set domain
- cd00096
Location:268 → 272
- Ig; Ig strand A' [structural motif]
- cd05722
Location:63 → 159
- IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cd05723
Location:355 → 438
- IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cl11960
Location:163 → 250
- Ig; Immunoglobulin domain
-
XM_030244107.2 → XP_030099967.1 neogenin isoform X5
- Conserved Domains (8) summary
-
- cd05722
Location:65 → 159
- Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
- cd05723
Location:368 → 438
- Ig4_Neogenin; Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins
- smart00060
Location:750 → 829
- FN3; Fibronectin type 3 domain
- cd00063
Location:550 → 639
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:647 → 730
- fn3; Fibronectin type III domain
- pfam06583
Location:1153 → 1456
- Neogenin_C; Neogenin C-terminus
- pfam07679
Location:261 → 348
- I-set; Immunoglobulin I-set domain
- cl11960
Location:163 → 250
- Ig; Immunoglobulin domain
-
XM_036154677.1 → XP_036010570.1 neogenin isoform X12
- Conserved Domains (9) summary
-
- smart00060
Location:750 → 829
- FN3; Fibronectin type 3 domain
- cd00063
Location:550 → 639
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:647 → 732
- fn3; Fibronectin type III domain
- pfam06583
Location:1158 → 1408
- Neogenin_C; Neogenin C-terminus
- pfam07679
Location:261 → 348
- I-set; Immunoglobulin I-set domain
- cd00096
Location:268 → 272
- Ig; Ig strand A' [structural motif]
- cd05722
Location:63 → 159
- IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cd05723
Location:355 → 438
- IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cl11960
Location:163 → 250
- Ig; Immunoglobulin domain
-
XM_036154675.1 → XP_036010568.1 neogenin isoform X9
- Conserved Domains (9) summary
-
- smart00060
Location:770 → 849
- FN3; Fibronectin type 3 domain
- cd00063
Location:570 → 659
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:667 → 752
- fn3; Fibronectin type III domain
- pfam06583
Location:1173 → 1423
- Neogenin_C; Neogenin C-terminus
- pfam07679
Location:261 → 348
- I-set; Immunoglobulin I-set domain
- cd00096
Location:268 → 272
- Ig; Ig strand A' [structural motif]
- cd05722
Location:63 → 159
- IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cd05723
Location:355 → 438
- IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
- cl11960
Location:163 → 250
- Ig; Immunoglobulin domain