Garin3 golgi associated RAB2 interactor 3 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Garin3provided by MGI
Official Full Name: golgi associated RAB2 interactor 3provided by MGI
Primary source: MGI:MGI:3650836
See related: Ensembl:ENSMUSG00000020401 AllianceGenome:MGI:3650836
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Fam71b; Gari-l3
Summary: Located in Golgi apparatus. Orthologous to human GARIN3 (golgi associated RAB2 interactor family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Restricted expression toward testis adult (RPKM 78.7) See more
Orthologs: human all
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Genomic context

Location:: 11 B1.1; 11 27.83 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	11	NC_000077.7 (46295555..46298812)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	11	NC_000077.6 (46404728..46407985)

Chromosome 11 - NC_000077.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (4) 1 citation
Targeted (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in Cajal body	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Golgi-associated RAB2B interactor protein 3

Names: Golgi associated RAB2B interactor protein 3; Golgi-associated Rab2B interactor-like 3; family with sequence similarity 71, member B; protein FAM71B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013783.2 → NP_001013805.1 Golgi-associated RAB2B interactor protein 3

See identical proteins and their annotated locations for NP_001013805.1

Status: VALIDATED

Source sequence(s)

AL662806, AV282256, BB615215

Consensus CDS

CCDS24576.1

UniProtKB/Swiss-Prot

Q5STT6

UniProtKB/TrEMBL

B7XG48, B9EKM7

Related

ENSMUSP00000055079.6, ENSMUST00000063166.6

Conserved Domains (2) summary

pfam12480
Location:120 → 187

DUF3699; Protein of unknown function (DUF3699)

pfam12871
Location:499 → 572

PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term