U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm1110 predicted gene 1110 [ Mus musculus (house mouse) ]

    Gene ID: 382064, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm1110provided by MGI
    Official Full Name
    predicted gene 1110provided by MGI
    Primary source
    MGI:MGI:2685956
    See related
    Ensembl:ENSMUSG00000079644 AllianceGenome:MGI:2685956
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable beta-galactosidase activity. Predicted to be active in vacuole. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 110.1) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm1110 in Genome Data Viewer
    Location:
    9 A4; 9 11.8 cM
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (26790863..26834480, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (26879567..26923184, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene galactosidase, beta 1-like 2 Neighboring gene galactosidase, beta 1 like 3 Neighboring gene STARR-seq mESC enhancer starr_23614 Neighboring gene STARR-seq mESC enhancer starr_23615 Neighboring gene STARR-seq mESC enhancer starr_23616 Neighboring gene zinc finger CCCH type containing 11A pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8282 Neighboring gene acyl-Coenzyme A dehydrogenase family, member 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Systematic identification and integrative analysis of novel genes expressed specifically or predominantly in mouse epididymis. Oh J, et al. BMC Genomics, 2006 Dec 13. PMID 17166261, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables beta-galactosidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in galactose catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in vacuole IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    beta-galactosidase-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281475.1 → NP_001268404.1  beta-galactosidase-like protein precursor

      Status: INFERRED

      Source sequence(s)
      AC138616
      Consensus CDS
      CCDS90521.1
      UniProtKB/TrEMBL
      F6Y113, Q0Q237
      Related
      ENSMUSP00000110916.3, ENSMUST00000115261.3
      Conserved Domains (1) summary
      cl38930
      Location:55 → 366
      AmyAc_family; Alpha amylase catalytic domain family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      26790863..26834480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510461.3 → XP_006510524.1  beta-galactosidase-like protein isoform X2

      UniProtKB/TrEMBL
      Q0Q237
      Conserved Domains (1) summary
      cl38930
      Location:55 → 343
      AmyAc_family; Alpha amylase catalytic domain family

    2. XM_006510459.3 → XP_006510522.1  beta-galactosidase-like protein isoform X1

      UniProtKB/TrEMBL
      F6Y113, Q0Q237
      Conserved Domains (1) summary
      cl38930
      Location:55 → 366
      AmyAc_family; Alpha amylase catalytic domain family

    3. XM_006510460.3 → XP_006510523.1  beta-galactosidase-like protein isoform X1

      UniProtKB/TrEMBL
      F6Y113, Q0Q237
      Conserved Domains (1) summary
      cl38930
      Location:55 → 366
      AmyAc_family; Alpha amylase catalytic domain family

    4. XM_006510463.2 → XP_006510526.1  beta-galactosidase-like protein isoform X3

      UniProtKB/TrEMBL
      Q0Q237
      Conserved Domains (2) summary
      COG1874
      Location:1 → 493
      GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]
      cl38930
      Location:1 → 242
      AmyAc_family; Alpha amylase catalytic domain family

    RNA

    1. XR_001778935.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001177509.1: Suppressed sequence

      Description
      NM_001177509.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools