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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011596.2Â RefSeqGene
- Range
-
5001..295772
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_418
mRNA and Protein(s)
-
NM_001301012.2 → NP_001287941.1  eyes absent homolog 4 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has multiple differences in its coding region, compared to variant 1. The resulting isoform (e) is shorter than isoform a.
- Source sequence(s)
-
AK295798, AK301950, AL121959, AL450270, AW613879
- Consensus CDS
-
CCDS75523.1
- UniProtKB/TrEMBL
- A0A0S2Z3Q2, E7ESD5
- Related
- ENSP00000516341.1, ENST00000706301.1
- Conserved Domains (2) summary
-
- TIGR01658
Location:314 → 585
- EYA-cons_domain; eyes absent protein conserved domain
- pfam12533
Location:153 → 232
- Neuro_bHLH; Neuronal helix-loop-helix transcription factor
-
NM_001301013.2 → NP_001287942.1  eyes absent homolog 4 isoform f
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains an alternate in-frame segment of the 5' coding region, compared to variant 1. The resulting isoform (f) is longer than isoform a.
- Source sequence(s)
-
AK299378, AK301950, AL121959, AL450270, AW613879, Y17114
- Consensus CDS
-
CCDS75521.1
- UniProtKB/TrEMBL
- B4DRQ6, F2Z2Y1
- Related
- ENSP00000432770.1, ENST00000531901.5
- Conserved Domains (3) summary
-
- TIGR01658
Location:374 → 645
- EYA-cons_domain; eyes absent protein conserved domain
- pfam00702
Location:376 → 621
- Hydrolase; haloacid dehalogenase-like hydrolase
- pfam12533
Location:207 → 286
- Neuro_bHLH; Neuronal helix-loop-helix transcription factor
-
NM_001370458.1 → NP_001357387.1  eyes absent homolog 4 isoform g
Status: REVIEWED
- Source sequence(s)
-
AL024497, AL121959, AL450270
- Consensus CDS
-
CCDS94004.1
- UniProtKB/TrEMBL
- B4DRQ6, E9PLN6
- Related
- ENSP00000433219.1, ENST00000525849.7
- Conserved Domains (1) summary
-
- cd02601
Location:345 → 616
- HAD_Eya; protein tyrosine phosphatase domain of the nuclear transcription factor of Eyes absent (Eya) and related phosphatase domains
-
NM_001370459.1 → NP_001357388.1  eyes absent homolog 4 isoform h
Status: REVIEWED
- Source sequence(s)
-
AL024497, AL121959, AL450270
- Consensus CDS
-
CCDS94005.1
- UniProtKB/TrEMBL
- A0A8C8KDW0, E7ESD5
- Related
- ENSP00000347294.4, ENST00000355167.8
- Conserved Domains (1) summary
-
- cd02601
Location:320 → 591
- HAD_Eya; protein tyrosine phosphatase domain of the nuclear transcription factor of Eyes absent (Eya) and related phosphatase domains
-
NM_004100.5 → NP_004091.3  eyes absent homolog 4 isoform a
See identical proteins and their annotated locations for NP_004091.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform a, which is more abundant in adult brain.
- Source sequence(s)
-
AL450270, AW613879, BC014193, BX490250, DA760903, Y17114
- Consensus CDS
-
CCDS5165.1
- UniProtKB/Swiss-Prot
- B7Z7F7, O95464, O95677, O95679, Q8IW39, Q9NTR7
- UniProtKB/TrEMBL
-
B4DRQ6
- Related
- ENSP00000347434.7, ENST00000355286.12
- Conserved Domains (3) summary
-
- TIGR01658
Location:368 → 639
- EYA-cons_domain; eyes absent protein conserved domain
- pfam00702
Location:370 → 615
- Hydrolase; haloacid dehalogenase-like hydrolase
- pfam12533
Location:207 → 286
- Neuro_bHLH; Neuronal helix-loop-helix transcription factor
-
NM_172103.4 → NP_742101.2  eyes absent homolog 4 isoform b
See identical proteins and their annotated locations for NP_742101.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame segment of the 5' coding region, compared to variant 1. The resulting isoform (b) is shorter than isoform a.
- Source sequence(s)
-
AL450270, AW613879, BC014193, BC041063, BX490250, Y17114
- Consensus CDS
-
CCDS43506.1
- UniProtKB/TrEMBL
- A0A0S2Z3V9, B4DRQ6
- Related
- ENSP00000404558.3, ENST00000431403.3
- Conserved Domains (2) summary
-
- cd02601
Location:345 → 616
- HAD_Eya; protein tyrosine phosphatase domain of the nuclear transcription factor of Eyes absent (Eya) and related phosphatase domains
- cl25764
Location:109 → 260
- PAT1; Topoisomerase II-associated protein PAT1
-
NM_172105.4 → NP_742103.1  eyes absent homolog 4 isoform d
See identical proteins and their annotated locations for NP_742103.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting isoform (d) is the same size but has a region of difference in the C-terminal, compared to isoform a.
- Source sequence(s)
-
AJ007994, AL450270, AW613879, BC014193, BX490250, DA760903, Y17114
- UniProtKB/TrEMBL
-
B4DRQ6
- Conserved Domains (2) summary
-
- TIGR01658
Location:368 → 639
- EYA-cons_domain; eyes absent protein conserved domain
- pfam12533
Location:207 → 286
- Neuro_bHLH; Neuronal helix-loop-helix transcription factor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12Â Reference GRCh38.p14 Primary Assembly
- Range
-
133240593..133532128
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017010368.3 → XP_016865857.1  eyes absent homolog 4 isoform X1
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418278.1 → XP_047274234.1  eyes absent homolog 4 isoform X8
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418275.1 → XP_047274231.1  eyes absent homolog 4 isoform X4
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418279.1 → XP_047274235.1  eyes absent homolog 4 isoform X9
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418282.1 → XP_047274238.1  eyes absent homolog 4 isoform X12
- UniProtKB/TrEMBL
- B4DRQ6, E9PLN6
-
XM_047418276.1 → XP_047274232.1  eyes absent homolog 4 isoform X6
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418285.1 → XP_047274241.1  eyes absent homolog 4 isoform X15
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_047418286.1 → XP_047274242.1  eyes absent homolog 4 isoform X18
- UniProtKB/TrEMBL
- A0A8C8KDW0, E7ESD5
-
XM_047418288.1 → XP_047274244.1  eyes absent homolog 4 isoform X20
- UniProtKB/TrEMBL
- A0A0S2Z3Q2, E7ESD5
- Related
- ENSP00000395916.2, ENST00000452339.6
-
XM_017010373.3 → XP_016865862.1  eyes absent homolog 4 isoform X16
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_047418277.1 → XP_047274233.1  eyes absent homolog 4 isoform X7
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_005266851.6 → XP_005266908.1  eyes absent homolog 4 isoform X3
- UniProtKB/TrEMBL
-
B4DRQ6
- Conserved Domains (2) summary
-
- TIGR01658
Location:374 → 645
- EYA-cons_domain; eyes absent protein conserved domain
- pfam12533
Location:207 → 286
- Neuro_bHLH; Neuronal helix-loop-helix transcription factor
-
XM_017010369.3 → XP_016865858.1  eyes absent homolog 4 isoform X2
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418281.1 → XP_047274237.1  eyes absent homolog 4 isoform X11
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_017010371.3 → XP_016865860.1  eyes absent homolog 4 isoform X5
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_047418283.1 → XP_047274239.1  eyes absent homolog 4 isoform X13
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_047418280.1 → XP_047274236.1  eyes absent homolog 4 isoform X10
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_047418284.1 → XP_047274240.1  eyes absent homolog 4 isoform X14
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_017010374.3 → XP_016865863.1  eyes absent homolog 4 isoform X17
- UniProtKB/TrEMBL
-
E7ESD5
- Related
- ENSP00000388670.2, ENST00000430974.6
-
XM_047418287.1 → XP_047274243.1  eyes absent homolog 4 isoform X19
- UniProtKB/TrEMBL
-
E7ESD5
RNA
-
XR_001743219.3 RNA Sequence
-
XR_001743220.3 RNA Sequence
-
XR_007059221.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1Â Alternate T2T-CHM13v2.0
- Range
-
134429416..134720956
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054354458.1 → XP_054210433.1  eyes absent homolog 4 isoform X8
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354459.1 → XP_054210434.1  eyes absent homolog 4 isoform X9
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354469.1 → XP_054210444.1  eyes absent homolog 4 isoform X18
- UniProtKB/TrEMBL
- A0A8C8KDW0, E7ESD5
-
XM_054354471.1 → XP_054210446.1  eyes absent homolog 4 isoform X20
- UniProtKB/TrEMBL
- A0A0S2Z3Q2, E7ESD5
-
XM_054354451.1 → XP_054210426.1  eyes absent homolog 4 isoform X1
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354454.1 → XP_054210429.1  eyes absent homolog 4 isoform X4
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354456.1 → XP_054210431.1  eyes absent homolog 4 isoform X6
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354466.1 → XP_054210441.1  eyes absent homolog 4 isoform X15
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_054354467.1 → XP_054210442.1  eyes absent homolog 4 isoform X16
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_054354462.1 → XP_054210437.1  eyes absent homolog 4 isoform X12
- UniProtKB/TrEMBL
- B4DRQ6, E9PLN6
-
XM_054354453.1 → XP_054210428.1  eyes absent homolog 4 isoform X3
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354461.1 → XP_054210436.1  eyes absent homolog 4 isoform X11
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354463.1 → XP_054210438.1  eyes absent homolog 4 isoform X13
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354464.1 → XP_054210439.1  eyes absent homolog 4 isoform X14
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354468.1 → XP_054210443.1  eyes absent homolog 4 isoform X17
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_054354470.1 → XP_054210445.1  eyes absent homolog 4 isoform X19
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_054354457.1 → XP_054210432.1  eyes absent homolog 4 isoform X7
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354452.1 → XP_054210427.1  eyes absent homolog 4 isoform X2
- UniProtKB/TrEMBL
-
B4DRQ6
-
XM_054354465.1 → XP_054210440.1  eyes absent homolog 4 isoform X21
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_054354455.1 → XP_054210430.1  eyes absent homolog 4 isoform X5
- UniProtKB/TrEMBL
-
E7ESD5
-
XM_054354460.1 → XP_054210435.1  eyes absent homolog 4 isoform X10
- UniProtKB/TrEMBL
-
E7ESD5
RNA
-
XR_008487274.1 RNA Sequence
-
XR_008487275.1 RNA Sequence
-
XR_008487276.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_172104.1: Suppressed sequence
- Description
- NM_172104.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.