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    LINC02946 long intergenic non-protein coding RNA 2946 [ Homo sapiens (human) ]

    Gene ID: 285000, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC02946provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2946provided by HGNC
    Primary source
    HGNC:HGNC:27680
    See related
    Ensembl:ENSG00000287036 AllianceGenome:HGNC:27680
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RMEL1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02946 in Genome Data Viewer
    Location:
    2q12.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (105593097..105610559, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (106054263..106071746, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (106209554..106227016, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373529 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:106093757-106093969 Neighboring gene VISTA enhancer hs2590 Neighboring gene uncharacterized LOC105375311 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106192987-106193885 Neighboring gene uncharacterized LOC107985929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16317 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52468 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:106315285-106315464 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11842 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16320 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106378480-106379325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106385690-106386192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106386193-106386695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16321 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:106394362-106394862 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:106399357-106399857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106403143-106403714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16326 Neighboring gene NCK adaptor protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11843 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16331 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106428458-106428958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106428959-106429459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16335 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106497364-106498144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106498145-106498923

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Novel primate-specific genes, RMEL 1, 2 and 3, with highly restricted expression in melanoma, assessed by new data mining tool. Sousa JF, et al. PLoS One, 2010 Oct 20. PMID 20975957, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • enriched in melanoma 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038891.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC038566
      Related
      ENST00000720516.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      105593097..105610559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      106054263..106071746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials