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    C2orf80 chromosome 2 open reading frame 80 [ Homo sapiens (human) ]

    Gene ID: 389073, updated on 17-Sep-2024

    Summary

    Official Symbol
    C2orf80provided by HGNC
    Official Full Name
    chromosome 2 open reading frame 80provided by HGNC
    Primary source
    HGNC:HGNC:34352
    See related
    Ensembl:ENSG00000188674 MIM:615536; AllianceGenome:HGNC:34352
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GONDA1
    Expression
    Restricted expression toward brain (RPKM 8.9) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See C2orf80 in Genome Data Viewer
    Location:
    2q33.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (208165347..208190030, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (208645334..208670364, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (209030071..209054754, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100507443 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:209007684-209008466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:209010074-209010697 Neighboring gene crystallin gamma B Neighboring gene crystallin gamma A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:209063532-209064208 Neighboring gene ribosomal protein SA pseudogene 27 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:209080668-209081230 Neighboring gene TPT1 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    uncharacterized protein C2orf80
    Names
    gonad development associated 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099334.3NP_001092804.2  uncharacterized protein C2orf80

      Status: VALIDATED

      Source sequence(s)
      AC016697
      Consensus CDS
      CCDS42809.1
      UniProtKB/Swiss-Prot
      A6NKZ3, Q0P641
      Related
      ENSP00000343171.4, ENST00000341287.9

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      208165347..208190030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017004074.2XP_016859563.1  uncharacterized protein C2orf80 isoform X2

    2. XM_017004076.2XP_016859565.1  uncharacterized protein C2orf80 isoform X4

      UniProtKB/Swiss-Prot
      A6NKZ3, Q0P641
    3. XM_047444270.1XP_047300226.1  uncharacterized protein C2orf80 isoform X5

    4. XM_047444267.1XP_047300223.1  uncharacterized protein C2orf80 isoform X1

    5. XM_047444268.1XP_047300224.1  uncharacterized protein C2orf80 isoform X3

      Related
      ENSP00000405393.1, ENST00000451346.5
    6. XM_047444271.1XP_047300227.1  uncharacterized protein C2orf80 isoform X6

    7. XM_047444272.1XP_047300228.1  uncharacterized protein C2orf80 isoform X7

      Related
      ENSP00000389385.1, ENST00000451342.5

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      208645334..208670364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054341978.1XP_054197953.1  uncharacterized protein C2orf80 isoform X5

    2. XM_054341973.1XP_054197948.1  uncharacterized protein C2orf80 isoform X1

    3. XM_054341975.1XP_054197950.1  uncharacterized protein C2orf80 isoform X3

    4. XM_054341974.1XP_054197949.1  uncharacterized protein C2orf80 isoform X2

    5. XM_054341977.1XP_054197952.1  uncharacterized protein C2orf80 isoform X4

    6. XM_054341979.1XP_054197954.1  uncharacterized protein C2orf80 isoform X6

    7. XM_054341976.1XP_054197951.1  uncharacterized protein C2orf80 isoform X4

    8. XM_054341980.1XP_054197955.1  uncharacterized protein C2orf80 isoform X7