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    LINC01538 long intergenic non-protein coding RNA 1538 [ Homo sapiens (human) ]

    Gene ID: 400654, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01538provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1538provided by HGNC
    Primary source
    HGNC:HGNC:51306
    See related
    Ensembl:ENSG00000266952 AllianceGenome:HGNC:51306
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01538 in Genome Data Viewer
    Location:
    18q22.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (64213082..64260055, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (64418198..64465171, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (61880317..61927290, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 305 Neighboring gene NANOG hESC enhancer GRCh37_chr18:61777924-61778425 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:61783938-61784528 Neighboring gene long intergenic non-protein coding RNA 1924 Neighboring gene uncharacterized LOC124904357 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:62084104-62084671 Neighboring gene uncharacterized LOC105372166 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:62289597-62290796 Neighboring gene uncharacterized LOC105372167

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • RP11-909B2.1
    • TCONS_00026184

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033983.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC100848, BC042493, BG722547
      Related
      ENST00000588074.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      64213082..64260055 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      64418198..64465171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)