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    LINC02543 long intergenic non-protein coding RNA 2543 [ Homo sapiens (human) ]

    Gene ID: 101928406, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02543provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2543provided by HGNC
    Primary source
    HGNC:HGNC:53577
    See related
    AllianceGenome:HGNC:53577
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02543 in Genome Data Viewer
    Location:
    6p22.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (15994944..16000491)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (15867145..15872688)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (15995175..16000722)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 3 pseudogene 5 Neighboring gene uncharacterized LOC105374949 Neighboring gene Sharpr-MPRA regulatory region 8871 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24095 Neighboring gene Sharpr-MPRA regulatory region 12955 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16954 Neighboring gene CRISPRi-validated cis-regulatory element chr6.836 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:16064773-16065514 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:16065515-16066255 Neighboring gene Sharpr-MPRA regulatory region 5392 Neighboring gene MDH1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24096 Neighboring gene myosin regulatory light chain interacting protein Neighboring gene microRNA 4639

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183311.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365265

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      15994944..16000491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      15867145..15872688
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)