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Status |
Public on Oct 02, 2014 |
Title |
Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by array
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Summary |
To address whether changes in gene expression in blood cells with sleep loss are different in individuals resistant and sensitive to sleep deprivation (SD). Blood draws every 4 hours during a 3-day study: 24-hour normal baseline, 38 hours of continuous wakefulness and subsequent recovery sleep, for a total of 19 time-points per subject, with every 2-hr psychomotor vigilance test (PVT) assessment when awake. Fourteen subjects who were previously identified as behaviourally resistant (n=7) or sensitive (n=7) to SD by PVT. Intervention consisted of 38 hours continuous wakefulness. We found 4,481 unique genes with a significant 24-hour diurnal rhythm during a normal sleep-wake cycle in blood (false discovery rate [FDR] <5%). Biological pathways were enriched for biosynthetic processes during sleep. After accounting for circadian effects, two genes (SREBF1 and CPT1A, both involved in lipid metabolism) exhibited small, but significant, linear changes in expression with the duration of SD (FDR<5%). The main change with SD was a reduction in the amplitude of the diurnal rhythm of expression of normally cycling probe sets. This reduction was noticeably higher in behaviourally resistant subjects than sensitive subjects, at any given p-value. Furthermore, blood cell type enrichment analysis showed that the expression pattern difference between sensitive and resistant subjects is mainly found in cells of myeloid origin, such as monocytes. Individual differences in behavioural effects of sleep deprivation are associated with differences in diurnal amplitude of gene expression for genes that show circadian rhythmicity.
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Overall design |
Blood draws were done every 4 hours during a 3-day (+1 baseline day) study: 24-hour normal baseline (6 time points: day 1 8hr, 12hr, 16hr, 20hr, day 2 0hr, 4hr), 38 hours of continuous wakefulness (10 time points: day 2 8hr, 12hr, 16hr, 20hr, day 3 0hr, 4hr, 8hr, 12hr, 16hr, 20hr) and subsequent recovery sleep (3 time points: day 4 0hr, 4hr, 8hr), for a total of 19 time-points per subject, with every 2-hr psychomotor vigilance test (PVT) assessment when awake. The missing/failed samples were as following: Resistant subjects (total 10 samples): BH006 day 2 20hr, 12hr, BH003 day 2 12hr, 4hr, BH003 day 3 4hr, BH008 day 4 0hr, BH008 day 1 16hr, BH008 day 3 16hr 20hr, BH010 day 4 0hr; Sensitive subjects (total 7 samples): BH004 day 2 12hr and 1 more missing sample, BH026 day 2 4hr, BH007 day 2 20hr and 1 more missing sample, BH016 day 2 4hr, BH015 day 3 0hr.
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Contributor(s) |
Shockley KR, Pack AI, Podtelezhinikov A |
Citation(s) |
25197809 |
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Submission date |
Apr 21, 2014 |
Last update date |
Mar 04, 2015 |
Contact name |
Keith Shockley |
Organization name |
NIEHS
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Street address |
111 TW Alexander Drive
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City |
RTP |
State/province |
NC |
ZIP/Postal code |
27709 |
Country |
USA |
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Platforms (1) |
GPL10379 |
Rosetta/Merck Human RSTA Custom Affymetrix 2.0 microarray [HuRSTA-2a520709] |
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Samples (249)
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GSM1371587 |
patient BH015, high responder, male, day2, hour12, baseline |
GSM1371588 |
patient BH005, high responder, female, day2, hour 4, baseline |
GSM1371589 |
patient BH007, high responder, male, day2, hour12, baseline |
GSM1371590 |
patient BH005, high responder, female, day1, hour20, baseline |
GSM1371591 |
patient BH005, high responder, female, day1, hour16, baseline |
GSM1371592 |
patient BH007, high responder, male, day3, hour 0, sleepdep |
GSM1371593 |
patient BH005, high responder, female, day4, hour 0, recovery |
GSM1371594 |
patient BH005, high responder, female, day1, hour 8, baseline |
GSM1371595 |
patient BH005, high responder, female, day3, hour 8, sleepdep |
GSM1371596 |
patient BH005, high responder, female, day2, hour 0, baseline |
GSM1371597 |
patient BH005, high responder, female, day3, hour20, sleepdep |
GSM1371598 |
patient BH005, high responder, female, day2, hour 8, baseline |
GSM1371599 |
patient BH007, high responder, male, day2, hour 4, baseline |
GSM1371600 |
patient BH007, high responder, male, day1, hour 8, baseline |
GSM1371601 |
patient BH005, high responder, female, day2, hour20, baseline |
GSM1371602 |
patient BH005, high responder, female, day2, hour16, baseline |
GSM1371603 |
patient BH005, high responder, female, day3, hour 4, sleepdep |
GSM1371604 |
patient BH007, high responder, male, day3, hour 4, sleepdep |
GSM1371605 |
patient BH007, high responder, male, day1, hour16, baseline |
GSM1371606 |
patient BH005, high responder, female, day3, hour16, sleepdep |
GSM1371607 |
patient BH005, high responder, female, day2, hour12, baseline |
GSM1371608 |
patient BH005, high responder, female, day4, hour 8, recovery |
GSM1371609 |
patient BH005, high responder, female, day3, hour 0, sleepdep |
GSM1371610 |
patient BH005, high responder, female, day4, hour 4, recovery |
GSM1371611 |
patient BH005, high responder, female, day3, hour12, sleepdep |
GSM1371612 |
patient BH004, high responder, female, day1, hour20, baseline |
GSM1371613 |
patient BH014, low responder, male, day1, hour20, baseline |
GSM1371614 |
patient BH014, low responder, male, day2, hour 0, baseline |
GSM1371615 |
patient BH014, low responder, male, day4, hour 0, recovery |
GSM1371616 |
patient BH014, low responder, male, day4, hour 4, recovery |
GSM1371617 |
patient BH020, low responder, male, day1, hour20, baseline |
GSM1371618 |
patient BH014, low responder, male, day3, hour20, sleepdep |
GSM1371619 |
patient BH014, low responder, male, day1, hour16, baseline |
GSM1371620 |
patient BH014, low responder, male, day3, hour 8, sleepdep |
GSM1371621 |
patient BH016, high responder, male, day4, hour 4, recovery |
GSM1371622 |
patient BH014, low responder, male, day2, hour 8, baseline |
GSM1371623 |
patient BH014, low responder, male, day4, hour 8, recovery |
GSM1371624 |
patient BH009, low responder, female, day4, hour 8, recovery |
GSM1371625 |
patient BH009, low responder, female, day3, hour 0, sleepdep |
GSM1371626 |
patient BH009, low responder, female, day3, hour 4, sleepdep |
GSM1371627 |
patient BH014, low responder, male, day1, hour12, baseline |
GSM1371628 |
patient BH009, low responder, female, day2, hour 4, baseline |
GSM1371629 |
patient BH014, low responder, male, day2, hour20, baseline |
GSM1371630 |
patient BH009, low responder, female, day1, hour16, baseline |
GSM1371631 |
patient BH014, low responder, male, day3, hour16, sleepdep |
GSM1371632 |
patient BH026, high responder, female, day3, hour 4, sleepdep |
GSM1371633 |
patient BH020, low responder, male, day3, hour 0, sleepdep |
GSM1371634 |
patient BH016, high responder, male, day1, hour16, baseline |
GSM1371635 |
patient BH016, high responder, male, day3, hour 8, sleepdep |
GSM1371636 |
patient BH016, high responder, male, day1, hour20, baseline |
GSM1371637 |
patient BH026, high responder, female, day3, hour16, sleepdep |
GSM1371638 |
patient BH014, low responder, male, day3, hour 4, sleepdep |
GSM1371639 |
patient BH020, low responder, male, day2, hour 4, baseline |
GSM1371640 |
patient BH014, low responder, male, day3, hour 0, sleepdep |
GSM1371641 |
patient BH020, low responder, male, day3, hour 4, sleepdep |
GSM1371642 |
patient BH020, low responder, male, day2, hour12, baseline |
GSM1371643 |
patient BH026, high responder, female, day2, hour20, baseline |
GSM1371644 |
patient BH026, high responder, female, day4, hour 4, recovery |
GSM1371645 |
patient BH014, low responder, male, day2, hour 4, baseline |
GSM1371646 |
patient BH020, low responder, male, day2, hour 0, baseline |
GSM1371647 |
patient BH009, low responder, female, day3, hour20, sleepdep |
GSM1371648 |
patient BH026, high responder, female, day2, hour16, baseline |
GSM1371649 |
patient BH020, low responder, male, day3, hour20, sleepdep |
GSM1371650 |
patient BH009, low responder, female, day2, hour16, baseline |
GSM1371651 |
patient BH009, low responder, female, day2, hour 0, baseline |
GSM1371652 |
patient BH020, low responder, male, day3, hour 8, sleepdep |
GSM1371653 |
patient BH020, low responder, male, day1, hour12, baseline |
GSM1371654 |
patient BH009, low responder, female, day2, hour 8, baseline |
GSM1371655 |
patient BH009, low responder, female, day1, hour12, baseline |
GSM1371656 |
patient BH016, high responder, male, day3, hour16, sleepdep |
GSM1371657 |
patient BH026, high responder, female, day3, hour 8, sleepdep |
GSM1371658 |
patient BH020, low responder, male, day4, hour 8, recovery |
GSM1371659 |
patient BH020, low responder, male, day2, hour 8, baseline |
GSM1371660 |
patient BH020, low responder, male, day2, hour16, baseline |
GSM1371661 |
patient BH009, low responder, female, day3, hour16, sleepdep |
GSM1371662 |
patient BH014, low responder, male, day2, hour12, baseline |
GSM1371663 |
patient BH014, low responder, male, day1, hour 8, baseline |
GSM1371664 |
patient BH009, low responder, female, day3, hour12, sleepdep |
GSM1371665 |
patient BH026, high responder, female, day3, hour20, sleepdep |
GSM1371666 |
patient BH020, low responder, male, day3, hour12, sleepdep |
GSM1371667 |
patient BH009, low responder, female, day4, hour 4, recovery |
GSM1371668 |
patient BH020, low responder, male, day1, hour 8, baseline |
GSM1371669 |
patient BH009, low responder, female, day3, hour 8, sleepdep |
GSM1371670 |
patient BH009, low responder, female, day1, hour 8, baseline |
GSM1371671 |
patient BH009, low responder, female, day4, hour 0, recovery |
GSM1371672 |
patient BH026, high responder, female, day1, hour 8, baseline |
GSM1371673 |
patient BH020, low responder, male, day2, hour20, baseline |
GSM1371674 |
patient BH020, low responder, male, day1, hour16, baseline |
GSM1371675 |
patient BH020, low responder, male, day4, hour 0, recovery |
GSM1371676 |
patient BH014, low responder, male, day3, hour12, sleepdep |
GSM1371677 |
patient BH016, high responder, male, day1, hour12, baseline |
GSM1371678 |
patient BH009, low responder, female, day2, hour20, baseline |
GSM1371679 |
patient BH026, high responder, female, day4, hour 8, recovery |
GSM1371680 |
patient BH020, low responder, male, day4, hour 4, recovery |
GSM1371681 |
patient BH020, low responder, male, day3, hour16, sleepdep |
GSM1371682 |
patient BH026, high responder, female, day1, hour12, baseline |
GSM1371683 |
patient BH014, low responder, male, day2, hour16, baseline |
GSM1371684 |
patient BH010, low responder, female, day3, hour 0, sleepdep |
GSM1371685 |
patient BH009, low responder, female, day2, hour12, baseline |
GSM1371686 |
patient BH016, high responder, male, day4, hour 8, recovery |
GSM1371687 |
patient BH026, high responder, female, day3, hour 0, sleepdep |
GSM1371688 |
patient BH026, high responder, female, day2, hour12, baseline |
GSM1371689 |
patient BH016, high responder, male, day2, hour16, baseline |
GSM1371690 |
patient BH015, high responder, male, day4, hour 8, recovery |
GSM1371691 |
patient BH008, low responder, female, day2, hour 8, baseline |
GSM1371692 |
patient BH015, high responder, male, day4, hour 0, recovery |
GSM1371693 |
patient BH015, high responder, male, day4, hour 4, recovery |
GSM1371694 |
patient BH004, high responder, female, day3, hour 8, sleepdep |
GSM1371695 |
patient BH015, high responder, male, day2, hour20, baseline |
GSM1371696 |
patient BH015, high responder, male, day2, hour 4, baseline |
GSM1371697 |
patient BH004, high responder, female, day3, hour 0, sleepdep |
GSM1371698 |
patient BH015, high responder, male, day3, hour12, sleepdep |
GSM1371699 |
patient BH015, high responder, male, day1, hour16, baseline |
GSM1371700 |
patient BH026, high responder, female, day4, hour 0, recovery |
GSM1371701 |
patient BH005, high responder, female, day1, hour12, baseline |
GSM1371702 |
patient BH004, high responder, female, day1, hour12, baseline |
GSM1371703 |
patient BH003, low responder, female, day2, hour20, baseline |
GSM1371704 |
patient BH004, high responder, female, day3, hour 4, sleepdep |
GSM1371705 |
patient BH010, low responder, female, day3, hour16, sleepdep |
GSM1371706 |
patient BH026, high responder, female, day1, hour20, baseline |
GSM1371707 |
patient BH008, low responder, female, day1, hour12, baseline |
GSM1371708 |
patient BH016, high responder, male, day4, hour 0, recovery |
GSM1371709 |
patient BH015, high responder, male, day3, hour 4, sleepdep |
GSM1371710 |
patient BH007, high responder, male, day3, hour12, sleepdep |
GSM1371711 |
patient BH013, high responder, female, day4, hour 0, recovery |
GSM1371712 |
patient BH013, high responder, female, day3, hour16, sleepdep |
GSM1371713 |
patient BH004, high responder, female, day2, hour 4, baseline |
GSM1371714 |
patient BH015, high responder, male, day2, hour16, baseline |
GSM1371715 |
patient BH004, high responder, female, day2, hour 8, baseline |
GSM1371716 |
patient BH010, low responder, female, day4, hour 8, recovery |
GSM1371717 |
patient BH004, high responder, female, day4, hour 0, recovery |
GSM1371718 |
patient BH015, high responder, male, day1, hour12, baseline |
GSM1371719 |
patient BH015, high responder, male, day2, hour 8, baseline |
GSM1371720 |
patient BH015, high responder, male, day3, hour 8, sleepdep |
GSM1371721 |
patient BH004, high responder, female, day4, hour 4, recovery |
GSM1371722 |
patient BH015, high responder, male, day2, hour 0, baseline |
GSM1371723 |
patient BH026, high responder, female, day2, hour 0, baseline |
GSM1371724 |
patient BH015, high responder, male, day1, hour20, baseline |
GSM1371725 |
patient BH003, low responder, female, day2, hour16, baseline |
GSM1371726 |
patient BH004, high responder, female, day2, hour 0, baseline |
GSM1371727 |
patient BH007, high responder, male, day3, hour16, sleepdep |
GSM1371728 |
patient BH004, high responder, female, day1, hour16, baseline |
GSM1371729 |
patient BH013, high responder, female, day3, hour 8, sleepdep |
GSM1371730 |
patient BH013, high responder, female, day2, hour20, baseline |
GSM1371731 |
patient BH026, high responder, female, day2, hour 8, baseline |
GSM1371732 |
patient BH015, high responder, male, day3, hour16, sleepdep |
GSM1371733 |
patient BH010, low responder, female, day3, hour12, sleepdep |
GSM1371734 |
patient BH013, high responder, female, day1, hour 8, baseline |
GSM1371735 |
patient BH010, low responder, female, day4, hour 4, recovery |
GSM1371736 |
patient BH008, low responder, female, day2, hour 0, baseline |
GSM1371737 |
patient BH008, low responder, female, day3, hour16, sleepdep |
GSM1371738 |
patient BH016, high responder, male, day3, hour20, sleepdep |
GSM1371739 |
patient BH010, low responder, female, day2, hour16, baseline |
GSM1371740 |
patient BH006, low responder, male, day3, hour16, sleepdep |
GSM1371741 |
patient BH006, low responder, male, day1, hour 8, baseline |
GSM1371742 |
patient BH006, low responder, male, day4, hour 8, recovery |
GSM1371743 |
patient BH010, low responder, female, day3, hour 8, sleepdep |
GSM1371744 |
patient BH007, high responder, male, day3, hour 8, sleepdep |
GSM1371745 |
patient BH006, low responder, male, day3, hour 8, sleepdep |
GSM1371746 |
patient BH016, high responder, male, day2, hour12, baseline |
GSM1371747 |
patient BH010, low responder, female, day1, hour20, baseline |
GSM1371748 |
patient BH003, low responder, female, day3, hour 8, sleepdep |
GSM1371749 |
patient BH013, high responder, female, day3, hour20, sleepdep |
GSM1371750 |
patient BH013, high responder, female, day1, hour20, baseline |
GSM1371751 |
patient BH016, high responder, male, day3, hour12, sleepdep |
GSM1371752 |
patient BH008, low responder, female, day2, hour12, baseline |
GSM1371753 |
patient BH007, high responder, male, day4, hour 0, recovery |
GSM1371754 |
patient BH006, low responder, male, day2, hour 0, baseline |
GSM1371755 |
patient BH016, high responder, male, day2, hour 0, baseline |
GSM1371756 |
patient BH010, low responder, female, day2, hour 4, baseline |
GSM1371757 |
patient BH008, low responder, female, day2, hour20, baseline |
GSM1371758 |
patient BH003, low responder, female, day2, hour 0, baseline |
GSM1371759 |
patient BH010, low responder, female, day2, hour20, baseline |
GSM1371760 |
patient BH003, low responder, female, day3, hour 0, sleepdep |
GSM1371761 |
patient BH008, low responder, female, day4, hour 4, recovery |
GSM1371762 |
patient BH003, low responder, female, day1, hour 8, baseline |
GSM1371763 |
patient BH010, low responder, female, day2, hour 0, baseline |
GSM1371764 |
patient BH003, low responder, female, day1, hour12, baseline |
GSM1371765 |
patient BH007, high responder, male, day2, hour16, baseline |
GSM1371766 |
patient BH003, low responder, female, day3, hour16, sleepdep |
GSM1371767 |
patient BH008, low responder, female, day3, hour 4, sleepdep |
GSM1371768 |
patient BH008, low responder, female, day4, hour 8, recovery |
GSM1371769 |
patient BH013, high responder, female, day2, hour 4, baseline |
GSM1371770 |
patient BH010, low responder, female, day1, hour16, baseline |
GSM1371771 |
patient BH008, low responder, female, day3, hour 8, sleepdep |
GSM1371772 |
patient BH015, high responder, male, day1, hour 8, baseline |
GSM1371773 |
patient BH013, high responder, female, day2, hour 0, baseline |
GSM1371774 |
patient BH010, low responder, female, day2, hour 8, baseline |
GSM1371775 |
patient BH013, high responder, female, day2, hour 8, baseline |
GSM1371776 |
patient BH003, low responder, female, day1, hour20, baseline |
GSM1371777 |
patient BH003, low responder, female, day1, hour16, baseline |
GSM1371778 |
patient BH003, low responder, female, day3, hour12, sleepdep |
GSM1371779 |
patient BH007, high responder, male, day4, hour 8, recovery |
GSM1371780 |
patient BH006, low responder, male, day1, hour12, baseline |
GSM1371781 |
patient BH013, high responder, female, day3, hour 0, sleepdep |
GSM1371782 |
patient BH007, high responder, male, day1, hour12, baseline |
GSM1371783 |
patient BH003, low responder, female, day4, hour 0, recovery |
GSM1371784 |
patient BH013, high responder, female, day4, hour 4, recovery |
GSM1371785 |
patient BH013, high responder, female, day4, hour 8, recovery |
GSM1371786 |
patient BH006, low responder, male, day1, hour16, baseline |
GSM1371787 |
patient BH010, low responder, female, day1, hour 8, baseline |
GSM1371788 |
patient BH006, low responder, male, day3, hour20, sleepdep |
GSM1371789 |
patient BH007, high responder, male, day4, hour 4, recovery |
GSM1371790 |
patient BH010, low responder, female, day1, hour12, baseline |
GSM1371791 |
patient BH013, high responder, female, day2, hour16, baseline |
GSM1371792 |
patient BH003, low responder, female, day3, hour20, sleepdep |
GSM1371793 |
patient BH006, low responder, male, day2, hour16, baseline |
GSM1371794 |
patient BH013, high responder, female, day3, hour12, sleepdep |
GSM1371795 |
patient BH016, high responder, male, day1, hour 8, baseline |
GSM1371796 |
patient BH026, high responder, female, day1, hour16, baseline |
GSM1371797 |
patient BH006, low responder, male, day2, hour 4, baseline |
GSM1371798 |
patient BH006, low responder, male, day1, hour20, baseline |
GSM1371799 |
patient BH016, high responder, male, day3, hour 0, sleepdep |
GSM1371800 |
patient BH016, high responder, male, day3, hour 4, sleepdep |
GSM1371801 |
patient BH008, low responder, female, day1, hour20, baseline |
GSM1371802 |
patient BH006, low responder, male, day4, hour 4, recovery |
GSM1371803 |
patient BH003, low responder, female, day4, hour 8, recovery |
GSM1371804 |
patient BH006, low responder, male, day3, hour12, sleepdep |
GSM1371805 |
patient BH010, low responder, female, day3, hour 4, sleepdep |
GSM1371806 |
patient BH004, high responder, female, day3, hour12, sleepdep |
GSM1371807 |
patient BH010, low responder, female, day2, hour12, baseline |
GSM1371808 |
patient BH016, high responder, male, day2, hour 8, baseline |
GSM1371809 |
patient BH006, low responder, male, day2, hour 8, baseline |
GSM1371810 |
patient BH006, low responder, male, day4, hour 0, recovery |
GSM1371811 |
patient BH008, low responder, female, day2, hour16, baseline |
GSM1371812 |
patient BH007, high responder, male, day2, hour 8, baseline |
GSM1371813 |
patient BH013, high responder, female, day1, hour16, baseline |
GSM1371814 |
patient BH010, low responder, female, day3, hour20, sleepdep |
GSM1371815 |
patient BH004, high responder, female, day2, hour16, baseline |
GSM1371816 |
patient BH008, low responder, female, day3, hour12, sleepdep |
GSM1371817 |
patient BH013, high responder, female, day1, hour12, baseline |
GSM1371818 |
patient BH013, high responder, female, day3, hour 4, sleepdep |
GSM1371819 |
patient BH004, high responder, female, day2, hour20, baseline |
GSM1371820 |
patient BH013, high responder, female, day2, hour12, baseline |
GSM1371821 |
patient BH003, low responder, female, day2, hour 8, baseline |
GSM1371822 |
patient BH026, high responder, female, day3, hour12, sleepdep |
GSM1371823 |
patient BH003, low responder, female, day4, hour 4, recovery |
GSM1371824 |
patient BH006, low responder, male, day3, hour 0, sleepdep |
GSM1371825 |
patient BH008, low responder, female, day1, hour 8, baseline |
GSM1371826 |
patient BH006, low responder, male, day3, hour 4, sleepdep |
GSM1371827 |
patient BH015, high responder, male, day3, hour20, sleepdep |
GSM1371828 |
patient BH008, low responder, female, day2, hour 4, baseline |
GSM1371829 |
patient BH016, high responder, male, day2, hour20, baseline |
GSM1371830 |
patient BH004, high responder, female, day3, hour20, sleepdep |
GSM1371831 |
patient BH004, high responder, female, day1, hour 8, baseline |
GSM1371832 |
patient BH004, high responder, female, day4, hour 8, recovery |
GSM1371833 |
patient BH007, high responder, male, day1, hour20, baseline |
GSM1371834 |
patient BH009, low responder, female, day1, hour20, baseline |
GSM1371835 |
patient BH007, high responder, male, day3, hour20, sleepdep |
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Relations |
BioProject |
PRJNA244978 |
Supplementary file |
Size |
Download |
File type/resource |
GSE56931_RAW.tar |
1.2 Gb |
(http)(custom) |
TAR (of CEL) |
Processed data included within Sample table |
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