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Series GSE54370 Query DataSets for GSE54370
Status Public on Jan 25, 2014
Title Hypermethylation in the ZBTB20 gene is associated with major depressive disorder
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Genome-wide MeDIP-Sequencing of 23 monozygotic twin pairs (n=46) from Australia discordant for major depressive disorder (MDD).
Overall design MeDIP-seq of 23 monozygotic twin pairs discordant for major depressive disorder. MZ twin pairs were compared to identify significantly differently methylated sites associated with MDD.
Contributor(s) Davies MN, Krause L, Bell JT, Gao F, Ward KJ, Wu H, Lu H, Liu Y, Tsai P, Collier DA, Mill J, Henders A, Byrne E, Wray NR, Martin NG, Spector TD, Wang J
Citation(s) 24694013
Submission date Jan 24, 2014
Last update date May 15, 2019
Contact name Lutz Krause
Organization name QIMR Berghofer Medical Research Institute
Department Genetics and Computational Biology
Lab Bioinformatics
Street address 300 Herston Rd
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (46)
GSM1313979 Twin pair A Case MeDIP-seq
GSM1313980 Twin pair A Control MeDIP-seq
GSM1313981 Twin pair B Control MeDIP-seq
BioProject PRJNA236349
SRA SRP035640

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54370_medips.rpm.csv.gz 1.9 Gb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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