|
| Status |
Public on Sep 05, 2012 |
| Title |
US_BM_36_K020 |
| Sample type |
RNA |
| |
|
| Source name |
healthy control_peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
sample group: healthy control
tissue: whole blood
bacteria: none
outcome: normal
|
| Treatment protocol |
Samples are from bactreial meningitis patients and healthy controls.
|
| Growth protocol |
RNA was extracted from whole blood of bacterial meningitis patients and healthy controls.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Tempus blood extraction
|
| Label |
biotin
|
| Label protocol |
100 ng Total RNA Labeling protocol, whole transcript sense target labeling assay
|
| |
|
| Hybridization protocol |
25 ng/ul fragmented and labeled DNA target was hybridized according to the protocol.
|
| Scan protocol |
GeneChips were scanned using the Affymetrix Scanner 3000.
|
| Description |
PBMC gene expression data
US_BM_36_K020.CEL
|
| Data processing |
Images were processed using the Affymetrix Microarray Suite 5.0, cel files were normalized with RMA and further analyzed using Bioconductor software based on R language.
|
| |
|
| Submission date |
Sep 04, 2012 |
| Last update date |
Mar 28, 2013 |
| Contact name |
Sulev Koks |
| E-mail(s) |
sulev.koks@murdoch.edu.au
|
| Phone |
+61864570313
|
| Organization name |
Murdoch University
|
| Department |
Centre for Molecular Medicine and Innovative Therapeutics
|
| Street address |
90 South Street
|
| City |
Perth |
| State/province |
Western Australia |
| ZIP/Postal code |
6150 |
| Country |
Australia |
| |
|
| Platform ID |
GPL6244 |
| Series (1) |
| GSE40586 |
Peripheral blood RNA gene expression profiling in patients with bacterial meningitis |
|
| Relations |
| Reanalyzed by |
GSE45593 |
