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Sample GSM997337 Query DataSets for GSM997337
Status Public on Sep 05, 2012
Title US_BM_06_K016
Sample type RNA
 
Source name healthy control_peripheral blood
Organism Homo sapiens
Characteristics sample group: healthy control
tissue: whole blood
bacteria: none
outcome: normal
Treatment protocol Samples are from bactreial meningitis patients and healthy controls.
Growth protocol RNA was extracted from whole blood of bacterial meningitis patients and healthy controls.
Extracted molecule total RNA
Extraction protocol Tempus blood extraction
Label biotin
Label protocol 100 ng Total RNA Labeling protocol, whole transcript sense target labeling assay
 
Hybridization protocol 25 ng/ul fragmented and labeled DNA target was hybridized according to the protocol.
Scan protocol GeneChips were scanned using the Affymetrix Scanner 3000.
Description PBMC gene expression data
US_BM_06_K016.CEL
Data processing Images were processed using the Affymetrix Microarray Suite 5.0, cel files were normalized with RMA and further analyzed using Bioconductor software based on R language.
 
Submission date Sep 04, 2012
Last update date Mar 28, 2013
Contact name Sulev Koks
E-mail(s) sulev.koks@murdoch.edu.au
Phone +61864570313
Organization name Murdoch University
Department Centre for Molecular Medicine and Innovative Therapeutics
Street address 90 South Street
City Perth
State/province Western Australia
ZIP/Postal code 6150
Country Australia
 
Platform ID GPL6244
Series (1)
GSE40586 Peripheral blood RNA gene expression profiling in patients with bacterial meningitis
Relations
Reanalyzed by GSE45593

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
7892501 6.59
7892502 5.03
7892503 4.77
7892504 9.74
7892505 3.52
7892506 5.29
7892507 5.66
7892508 6.76
7892509 10.43
7892510 3.63
7892511 3.95
7892512 7.66
7892513 4.24
7892514 10.07
7892515 9.53
7892516 6.25
7892517 6.08
7892518 4.67
7892519 5.93
7892520 9.59

Total number of rows: 32321

Table truncated, full table size 412 Kbytes.




Supplementary file Size Download File type/resource
GSM997337_US_BM_06_K016.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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