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Sample GSM995527 Query DataSets for GSM995527
Status Public on Aug 31, 2012
Title PSU_RnaSeq_G1E-ER4_diffProtD_14hr_paired-end (superseded by GSE90211)
Sample type SRA
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
treatment: diffProtD_14hr
treatment description: 14 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)
labexpid: paired-end
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: paired-end
readtype: 2x99D
readtype description: Paired 99 nt directed reads
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_14hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol For more information, see
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
Description ****************************
GSM995527 record metadata submitted on Aug 31 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90211
Data processing
Submission date Aug 31, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (3)
GSE40522 ENCODE PSU Hardison RnaSeq
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Reanalyzed by GSE51667
Reanalyzed by GSE80797
Superseded by GSE90211
SRA SRX181756
BioSample SAMN01141821
Named Annotation GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hMinusRawRep1.bigWig
Named Annotation GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hMinusRawRep2.bigWig
Named Annotation GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hPlusRawRep1.bigWig
Named Annotation GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hPlusRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hMinusRawRep1.bigWig 42.5 Mb (ftp)(http) BIGWIG
GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hMinusRawRep2.bigWig 47.4 Mb (ftp)(http) BIGWIG
GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hPlusRawRep1.bigWig 42.8 Mb (ftp)(http) BIGWIG
GSM995527_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd14hPlusRawRep2.bigWig 47.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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