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Sample GSM995526 Query DataSets for GSM995526
Status Public on Aug 31, 2012
Title PSU_RnaSeq_MEL_DMSO_2.0pct_single (superseded by GSE93476)
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
treatment: DMSO_2.0pct
treatment description: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
labexpid: single
age: immortalized
age description: Immortal cells
labexpid: single
readtype: 1x45
readtype description: Single 45 nt reads
replicate: 1
strain: Unknown
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Treatment protocol DMSO_2.0pct
Extracted molecule polyA RNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description ****************************
GSM995526 record metadata submitted on Aug 31 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE93476
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
 
Submission date Aug 31, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE40522 ENCODE PSU Hardison RnaSeq
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
Reanalyzed by GSE80797
Superseded by GSE93476
SRA SRX181750
BioSample SAMN01141820
Named Annotation GSM995526_mm9_wgEncodePsuRnaSeqMelMImmortalUknR1x45Dm2p5dSigRep1.bigWig
Named Annotation GSM995526_mm9_wgEncodePsuRnaSeqMelMImmortalUknR1x45Dm2p5dSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM995526_mm9_wgEncodePsuRnaSeqMelMImmortalUknR1x45Dm2p5dSigRep1.bigWig 177.2 Mb (ftp)(http) BIGWIG
GSM995526_mm9_wgEncodePsuRnaSeqMelMImmortalUknR1x45Dm2p5dSigRep2.bigWig 124.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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