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Sample GSM995447 Query DataSets for GSM995447
Status Public on Aug 31, 2012
Title PSU_ChipSeq_Megakaryo_TAL1_(SC-12984)
Sample type SRA
Source name Megakaryo
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Megakaryo
cell organism: mouse
cell description: Megakaryocyte
cell sex: B
antibody: TAL1_(SC-12984)
antibody antibodydescription: goat polyclonal antibody; epitope mapping at the C-terminus of TAL1 of human origin, recommended for detection of TAL1 of mouse, rat and human origin. Antibody Target: TAL1
antibody targetdescription: TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-12984
age: E14.5
age description: Embryonic day 14.5
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM002352
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Mitch Weiss lab
Growth protocol Megakaryocyte_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Aug 31, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (4)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51337 Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
SRA SRX181747
BioSample SAMN01141816
Named Annotation GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep1.bigWig
Named Annotation GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep2.bigWig
Named Annotation GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep3.bigWig
Named Annotation GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep4.bigWig
Named Annotation GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputSig.bigWig

Supplementary file Size Download File type/resource
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputPk.broadPeak.gz 176.9 Kb (ftp)(http) BROADPEAK
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepPeaksRep1.broadPeak.gz 79.8 Kb (ftp)(http) BROADPEAK
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepPeaksRep2.broadPeak.gz 126.6 Kb (ftp)(http) BROADPEAK
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepPeaksRep3.broadPeak.gz 107.9 Kb (ftp)(http) BROADPEAK
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepPeaksRep4.broadPeak.gz 233.4 Kb (ftp)(http) BROADPEAK
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep1.bigWig 3.0 Gb (ftp)(http) BIGWIG
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep2.bigWig 5.1 Gb (ftp)(http) BIGWIG
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep3.bigWig 5.5 Gb (ftp)(http) BIGWIG
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputRepSignalRep4.bigWig 4.1 Gb (ftp)(http) BIGWIG
GSM995447_mm9_wgEncodePsuTfbsMegakaryoTal1BE14halfCd1InputSig.bigWig 6.3 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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