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Sample GSM989379 Query DataSets for GSM989379
Status Public on Mar 01, 2019
Title 13904269
Sample type RNA
 
Channel 1
Source name dimboa2cy3
Organism Spodoptera frugiperda
Characteristics label: dimboa2cy3
sample/extract: dimboa2
subject: L6 larvae
tissue: midgut
dvt_stage: 6
rna_number: 10
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3
Label protocol cDNA Pronto Promega
 
Channel 2
Source name dmso2dimcy5
Organism Spodoptera frugiperda
Characteristics label: dmso2dimcy5
sample/extract: dmso2dim
subject: L6 larvae
tissue: midgut
dvt_stage: 6
rna_number: 10
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy5
Label protocol cDNA Pronto Promega
 
 
Hybridization protocol Corning Pronto : 750.0 ng at 42 degree_C during 16 hours
Scan protocol Scanned on an GenePix 4000B fluorescent scanner. Image intensity data were extracted with GenePix Pro 6.0 analysis software.
Description dimboa2cy3 vs dmso2dimcy5
Date:2012/08/06
Data processing Unnormalized, log (base 2) transform of the (Ch1/Ch2) ratio of the medians shown in the data table below. Normalized data [i.e., Log (base 2) transform of the (Ch1/Ch2) ratio of the medians;limma package: normalizeWithinArray(loess, background:subtract) normalizeBetweenArrays (quantile); lmFit ;eBayes] linked as supplementary files on the Series record.
 
Submission date Aug 21, 2012
Last update date Mar 01, 2019
Contact name frederique hilliou
E-mail(s) hilliou@sophia.inra.fr
Phone 0033(0)492386578
Organization name INRA
Department SPE
Lab insect functional genomic
Street address 400 route des chappes, BP167
City Sophia Antipolis cedex
ZIP/Postal code 06903
Country France
 
Platform ID GPL8717
Series (1)
GSE40262 Induction Spodoptera midgut after induction by benzoxazinoids

Data table header descriptions
ID_REF
VALUE Unnormalized, Log (base 2) transform of the ratio of the medians

Data table
ID_REF VALUE
16456 0
16431 -6.539
16406 0
16381 1.230
15814 0
16356 -5.883
15789 0
16331 0
15764 0
16306 0.176
15739 0
16281 0
15714 -3.928
16256 -4.883
15689 0
15664 -3.304
15639 0.250
1508 -0.068
15614 0
1483 0

Total number of rows: 20800

Table truncated, full table size 199 Kbytes.




Supplementary file Size Download File type/resource
GSM989379_13904269_dim2cy3_610_dmso2cy5_850_20120607.gpr.gz 1.8 Mb (ftp)(http) GPR
Processed data are available on Series record

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