|
Status |
Public on Jul 24, 2015 |
Title |
Leiomyosarcoma_FFPE_9 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
Leiomyosarcoma tissue, FFPE, 1yr
|
Organism |
Homo sapiens |
Characteristics |
gender: Female tissue: Leiomyosarcoma tissue tissue status: FFPE archival leiomyosarcoma age: 1yr
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA extracted using Qiagen DNeasy following manufacturers' instructions for fresh tissue of Agilent protocol for FFPE tissue
|
Label |
Cy5
|
Label protocol |
500 - 1000ng DNA was labeled using Agilent ULS Labeling protocol for FFPE tissue DNA and Agilent Enzymatic labeling protocol for Fresh tissue DNA
|
|
|
Channel 2 |
Source name |
Reference DNA
|
Organism |
Homo sapiens |
Characteristics |
gender: Female sample type: Reference DNA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA extracted using Qiagen DNeasy following manufacturers' instructions for fresh tissue of Agilent protocol for FFPE tissue
|
Label |
Cy3
|
Label protocol |
500 - 1000ng DNA was labeled using Agilent ULS Labeling protocol for FFPE tissue DNA and Agilent Enzymatic labeling protocol for Fresh tissue DNA
|
|
|
|
Hybridization protocol |
Hydridization was done according to Agilent ULS Labeling protocol for FFPE tumour DNA and Agilent Enzymatic Labeling Protocol for fresh tumour DNA
|
Scan protocol |
Scanned on an Agilent G2565AA scanner.
|
Description |
LMS 9 FFPE
|
Data processing |
Agilent Feature Extraction Software (v 10.7.3) was used for background subtraction and LOWESS normalization.
|
|
|
Submission date |
Jul 26, 2012 |
Last update date |
Jul 24, 2015 |
Contact name |
Abdulazeez Temitope Salawu |
E-mail(s) |
mdp09ats@sheffield.ac.uk
|
Organization name |
University of Sheffield Medical School
|
Department |
Oncology
|
Lab |
Rare Tumour Research Group
|
Street address |
Beech Hill Road
|
City |
Sheffield |
ZIP/Postal code |
S10 2RX |
Country |
United Kingdom |
|
|
Platform ID |
GPL10123 |
Series (1) |
GSE39663 |
Copy Number Data from Archival Leiomyosarcoma |
|