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Sample GSM977001 Query DataSets for GSM977001
Status Public on Jul 24, 2015
Title Leiomyosarcoma_FFPE_4
Sample type genomic
 
Channel 1
Source name Leiomyosarcoma tissue, FFPE, 1yr
Organism Homo sapiens
Characteristics gender: Female
tissue: Leiomyosarcoma tissue
tissue status: FFPE
archival leiomyosarcoma age: 1yr
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extracted using Qiagen DNeasy following manufacturers' instructions for fresh tissue of Agilent protocol for FFPE tissue
Label Cy5
Label protocol 500 - 1000ng DNA was labeled using Agilent ULS Labeling protocol for FFPE tissue DNA and Agilent Enzymatic labeling protocol for Fresh tissue DNA
 
Channel 2
Source name Reference DNA
Organism Homo sapiens
Characteristics gender: Female
sample type: Reference DNA
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extracted using Qiagen DNeasy following manufacturers' instructions for fresh tissue of Agilent protocol for FFPE tissue
Label Cy3
Label protocol 500 - 1000ng DNA was labeled using Agilent ULS Labeling protocol for FFPE tissue DNA and Agilent Enzymatic labeling protocol for Fresh tissue DNA
 
 
Hybridization protocol Hydridization was done according to Agilent ULS Labeling protocol for FFPE tumour DNA and Agilent Enzymatic Labeling Protocol for fresh tumour DNA
Scan protocol Scanned on an Agilent G2565AA scanner.
Description LMS 4
Data processing Agilent Feature Extraction Software (v 10.7.3) was used for background subtraction and LOWESS normalization.
 
Submission date Jul 26, 2012
Last update date Jul 24, 2015
Contact name Abdulazeez Temitope Salawu
E-mail(s) mdp09ats@sheffield.ac.uk
Organization name University of Sheffield Medical School
Department Oncology
Lab Rare Tumour Research Group
Street address Beech Hill Road
City Sheffield
ZIP/Postal code S10 2RX
Country United Kingdom
 
Platform ID GPL10123
Series (1)
GSE39663 Copy Number Data from Archival Leiomyosarcoma

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 1.065287235e-001
2 0.000000000e+000
3 0.000000000e+000
4 0.000000000e+000
5 0.000000000e+000
6 0.000000000e+000
7 0.000000000e+000
8 3.774476625e-001
9 0.000000000e+000
10 0.000000000e+000
11 0.000000000e+000
12 0.000000000e+000
13 0.000000000e+000
14 0.000000000e+000
15 0.000000000e+000
16 0.000000000e+000
17 0.000000000e+000
18 0.000000000e+000
19 0.000000000e+000
20 0.000000000e+000

Total number of rows: 180880

Table truncated, full table size 4209 Kbytes.




Supplementary file Size Download File type/resource
GSM977001_US83603551_252206023440_S01_CGH_107_Sep09_1_3.txt.gz 19.0 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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