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Sample GSM967920 Query DataSets for GSM967920
Status Public on Jan 20, 2015
Title Brain-control 3
Sample type RNA
 
Source name Frozen brain tissue: posterior cingulate at thalamus level
Organism Homo sapiens
Characteristics gender: Male
age at death: 58
post-mortem interval (hours): 4:00
apoe genotype: 3/4
psen1 mutation: None
neuropathological data (braak stage): No neuropathological findings
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from frozen brain tissue (posterior cingulate area) using the RNeasy Lipid Tissue Mini Kit (Qiagen)
Label Biotin
Label protocol Labeled ssDNA was prepared according to the standard Affymetrix Terminal labeling Kit protocol.
 
Hybridization protocol Following fragmentation, 5 ug of ssDNA were hybridized for 16 hr at 45C following Affymetrix standard procedures
Scan protocol GeneChips were scanned according to the standard Affymetrix protocol (Affymetrix Genechip Command Console program 3.1.0.1228, scanner PlateScanner M10)
Description Gene expression data of final stages of Alzheimer's disease
Data processing Raw data was background adjusted, normalized and summarized by Robust Multi-array Analysis (RMA) using the Affy package (version 1.30.0) from Bioconductor on R language (version 2.13.2).
 
Submission date Jul 17, 2012
Last update date Jan 20, 2015
Contact name Anna Antonell
E-mail(s) antonell@clinic.ub.es
Organization name Hospital Clínic Barcelona
Department Unitat d'Alzheimer i altres transtorns cognitius
Lab Malalties neurodegeneratives
Street address C/Casanova, 143
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL11532
Series (1)
GSE39420 Gene expression profile of sporadic and PSEN1 early-onset Alzheimer’s Disease

Data table header descriptions
ID_REF
VALUE log2 RMA normalized signal intensity

Data table
ID_REF VALUE
7892501 2.425
7892502 3.660
7892503 2.441
7892504 8.017
7892505 2.322
7892506 3.060
7892507 2.901
7892508 5.964
7892509 10.468
7892510 3.282
7892511 3.665
7892512 4.450
7892513 2.290
7892514 9.291
7892515 8.433
7892516 2.426
7892517 6.079
7892518 2.732
7892519 3.537
7892520 8.016

Total number of rows: 33297

Table truncated, full table size 456 Kbytes.




Supplementary file Size Download File type/resource
GSM967920_C3.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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