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Sample GSM956776 Query DataSets for GSM956776
Status Public on Nov 07, 2012
Title Bone marrow mononuclear cells, 06_2096
Sample type genomic
 
Source name bone marrow mononuclear cells, leukemia
Organism Homo sapiens
Characteristics cell type: bone marrow mononuclear cells
gender: female
disease state: leukemia
treatment: SHOP/LAL-2005AR
recurrence: no
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol Mononuclear cells and B cells were selected by Lymphoprep or CD19 microbeads protocols, and total DNA was isolated by standard procedures.
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using High Scan SQ using the standard recommended Illumina scanner setting.
Description 06_2096
Data processing Genome Studio V2011.2. The methylation score of each CpG is represented as an average beta value (AVG_Beta).
 
Submission date Jul 05, 2012
Last update date Nov 30, 2012
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE39141 Genome-wide DNA methylation profiling predicts relapse in childhood B-cell acute lymphoblastic leukemia

Data table header descriptions
ID_REF
VALUE Average Beta
Intensity
Avg_NBEADS_A
Avg_NBEADS_B
BEAD_STDERR_A
BEAD_STDERR_B
Signal_A
Signal_B
Detection Pval

Data table
ID_REF VALUE Intensity Avg_NBEADS_A Avg_NBEADS_B BEAD_STDERR_A BEAD_STDERR_B Signal_A Signal_B Detection Pval
cg00000029 0.477744 10751 18 18 384.4304 236.4094 5567 5184 0.00
cg00000108 0.9268791 14588 14 14 170.7799 374.7003 974 13614 0.00
cg00000109 0.8335469 6923 10 10 160.3275 305.7922 1069 5854 0.00
cg00000165 0.1097497 7572 15 15 310.0969 93.46799 6730 842 0.00
cg00000236 0.8758574 8648 17 17 129.9991 293.9532 986 7662 0.00
cg00000289 0.5077434 4420 17 17 338.8223 144.3087 2125 2295 0.00
cg00000292 0.6960077 16532 11 11 427.8446 397.3919 4956 11576 0.00
cg00000321 0.3901348 18227 4 4 1372 568 11077 7150 0.00
cg00000363 0.8048242 19385 16 16 201 362.75 3703 15682 0.00
cg00000622 0.00900825 35534 9 10 339 196.3333 35213 321 0.00
cg00000658 0.7667375 16838 14 14 290.2457 407.3061 3851 12987 0.00
cg00000714 0.1254165 43419 16 16 1662.5 364 37961 5458 0.00
cg00000721 0.849518 8406 12 12 105.3664 288.6751 1180 7226 0.00
cg00000734 0.06769243 25442 12 12 550.2148 127.0171 23713 1729 0.00
cg00000769 0.03883047 19395 7 7 158.3671 128.13 18638 757 0.00
cg00000807 0.8357701 26369 16 16 393.75 616.75 4247 22122 0.00
cg00000884 0.8073604 7780 10 10 204.9156 361.7646 1418 6362 0.00
cg00000905 0.08432977 11023 16 16 357 93.75 10085 938 0.00
cg00000924 0.6116661 26627 7 7 342.0579 915.8079 10279 16348 0.00
cg00000948 0.8529412 20130 13 13 317.0112 287.6121 2875 17255 0.00

Total number of rows: 485577

Table truncated, full table size 30917 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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