|
Status |
Public on Nov 07, 2012 |
Title |
Bone marrow mononuclear cells, 06_2096 |
Sample type |
genomic |
|
|
Source name |
bone marrow mononuclear cells, leukemia
|
Organism |
Homo sapiens |
Characteristics |
cell type: bone marrow mononuclear cells gender: female disease state: leukemia treatment: SHOP/LAL-2005AR recurrence: no
|
Treatment protocol |
NA
|
Growth protocol |
NA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Mononuclear cells and B cells were selected by Lymphoprep or CD19 microbeads protocols, and total DNA was isolated by standard procedures.
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina labelling protocol.
|
|
|
Hybridization protocol |
Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
|
Scan protocol |
Arrays were imaged using High Scan SQ using the standard recommended Illumina scanner setting.
|
Description |
06_2096
|
Data processing |
Genome Studio V2011.2. The methylation score of each CpG is represented as an average beta value (AVG_Beta).
|
|
|
Submission date |
Jul 05, 2012 |
Last update date |
Nov 30, 2012 |
Contact name |
Manel Esteller |
Organization name |
IDIBELL
|
Department |
PEBC
|
Lab |
Cancer Epigenetics
|
Street address |
Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
|
City |
L'Hospitalet de Llobregat |
State/province |
Barcelona |
ZIP/Postal code |
08908 |
Country |
Spain |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE39141 |
Genome-wide DNA methylation profiling predicts relapse in childhood B-cell acute lymphoblastic leukemia |
|