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Sample GSM956762 Query DataSets for GSM956762
Status Public on Nov 07, 2012
Title Bone marrow mononuclear cells, 07_2252
Sample type genomic
 
Source name bone marrow mononuclear cells, leukemia
Organism Homo sapiens
Characteristics cell type: bone marrow mononuclear cells
gender: male
disease state: leukemia
treatment: SHOP/LAL-2005AR
recurrence: no
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol Mononuclear cells and B cells were selected by Lymphoprep or CD19 microbeads protocols, and total DNA was isolated by standard procedures.
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using High Scan SQ using the standard recommended Illumina scanner setting.
Description 07_2252
Data processing Genome Studio V2011.2. The methylation score of each CpG is represented as an average beta value (AVG_Beta).
 
Submission date Jul 05, 2012
Last update date Nov 30, 2012
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE39141 Genome-wide DNA methylation profiling predicts relapse in childhood B-cell acute lymphoblastic leukemia

Data table header descriptions
ID_REF
VALUE Average Beta
Intensity
Avg_NBEADS_A
Avg_NBEADS_B
BEAD_STDERR_A
BEAD_STDERR_B
Signal_A
Signal_B
Detection Pval

Data table
ID_REF VALUE Intensity Avg_NBEADS_A Avg_NBEADS_B BEAD_STDERR_A BEAD_STDERR_B Signal_A Signal_B Detection Pval
cg00000029 0.4758078 11350 13 13 325.609 155.3161 5902 5448 0.00
cg00000108 0.9003775 14204 6 6 329.4564 352.3183 1325 12879 0.00
cg00000109 0.7975389 7620 7 7 271.7565 480.3929 1463 6157 0.00
cg00000165 0.1404008 9031 15 15 530.5987 119.2879 7749 1282 0.00
cg00000236 0.7370442 10320 15 15 286.3426 343.6627 2640 7680 0.00
cg00000289 0.5006505 5281 9 9 189 122.3333 2587 2694 0.00
cg00000292 0.7396321 19142 16 16 277 390.75 4910 14232 0.00
cg00000321 17009 1 1 0.00 0.00 13089 3920 0.00
cg00000363 0.2659507 25228 10 10 575.5345 208.7103 18492 6736 0.00
cg00000622 0.02386356 28102 6 11 1244.749 186.5695 27429 673 0.00
cg00000658 0.7149935 20082 5 5 133.7169 422.6169 5652 14430 0.00
cg00000714 0.1818008 41792 15 15 775.3713 182.2884 34176 7616 0.00
cg00000721 0.8358542 9751 14 14 157.4169 341.8271 1517 8234 0.00
cg00000734 0.08187415 24914 15 15 707.2068 88.04582 22866 2048 0.00
cg00000769 0.08841296 18110 9 9 200.6667 142.3333 16500 1610 0.00
cg00000807 0.7030788 26631 12 12 303.1089 383.6493 7837 18794 0.00
cg00000884 0.7812093 9128 14 14 203.3858 177.1942 1919 7209 0.00
cg00000905 0.06599701 11946 20 20 410.5421 54.78366 11151 795 0.00
cg00000924 0.4496423 29955 15 15 762.9777 331.011 16441 13514 0.00
cg00000948 0.7188559 22031 17 17 565.8356 643.447 6122 15909 0.00

Total number of rows: 485577

Table truncated, full table size 30845 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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