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Sample GSM954298 Query DataSets for GSM954298
Status Public on Jul 03, 2012
Title #004
Sample type genomic
 
Source name liver
Organism Homo sapiens
Characteristics gender: female
age: 53
presurgical medication: yes
smoking: NA
alcohol intake: NA
Treatment protocol no treatment
Extracted molecule genomic DNA
Extraction protocol QIAamp DNA isolation procedure for blood or tissue (Qiagen)
Label C-Bio and A-DNP
Label protocol Illumina Infinium labeling protocol with C-Bio and A-DNP for Human HAPMAP SNP 300v2
 
Hybridization protocol Illumina Infinium Beadarrays hyb protocol
Scan protocol Standard Beadarray 500 Scanner parameter
Description 1827270203_B
Data processing Illumina Genotyping Processing with GenomeStudio and the provided Illumina Cluster-File
 
Submission date Jun 29, 2012
Last update date Jul 03, 2012
Contact name Michael Bonin
Organization name University Tuebingen
Department Medical Genetics
Lab Microarray Facility
Street address CAlwerstr. 7
City Tuebingen
State/province BW
ZIP/Postal code 72076
Country Germany
 
Platform ID GPL6980
Series (1)
GSE39036 Identification of expression quantitative trait loci (eQTL) in human liver (SNP)

Data table header descriptions
ID_REF
VALUE For each SNP we provide Gtype, Score, Theta, and R values
Score
Theta
R

Data table
ID_REF VALUE Score Theta R
rs10000010-126_B_F_IFB1153208421:0 BB 0.9368909 0.9936032 0.9716989
rs10000023-126_B_F_IFB1153358872:0 AA 0.8234195 0.04387137 2.174351
rs10000030-120_B_R_IFB1137703207:0 BB 0.8158658 1 0.7959215
rs1000007-123_T_F_IFB1152225452:0 AA 0.8747823 0.005027924 0.7890469
rs10000092-123_T_R_IFB1153358875:0 AB 0.9264655 0.5702142 1.094136
rs10000121-126_B_R_IFB1136471760:0 AB 0.891854 0.6804066 0.4695171
rs1000014-126_B_R_IFB1136184019:0 BB 0.7254323 0.9706579 1.371986
rs10000141-126_T_F_IFB1137734411:0 BB 0.8891098 0.9986439 0.9237652
rs1000016-126_B_R_IFB1156563530:0 AA 0.875866 0.008248358 1.663468
rs10000169-119_T_R_IFB1135612081:0 AB 0.8703538 0.6527668 1.209662
rs1000022-126_B_F_IFB1135126284:0 AB 0.8797732 0.6123199 0.9478164
rs10000272-126_T_R_IFB1136539894:0 AA 0.8434824 0.003252456 1.778264
rs10000282-121_T_R_IFB1136743500:0 BB 0.8183947 0.9909794 1.211637
rs10000300-126_T_R_IFB1152704058:0 BB 0.8601294 0.9894327 0.7877444
rs1000031-123_B_F_IFB1135583872:0 AA 0.8717313 0.01246716 2.179906
rs1000032-126_B_R_IFB1136145093:0 BB 0.384529 0.9955156 1.190078
rs10000388-126_B_F_IFB1135932472:0 BB 0.9530174 0.9965023 1.104069
rs1000040-126_T_F_IFB1152704061:0 AB 0.8484263 0.6165894 1.232008
rs1000041-126_T_F_IFB1153889147:0 BB 0.8351063 0.9795356 1.40935
rs10000432-126_T_R_IFB1135756304:0 BB 0.8544981 0.993853 0.8131238

Total number of rows: 318237

Table truncated, full table size 20610 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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