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Sample GSM952590 Query DataSets for GSM952590
Status Public on Aug 27, 2012
Title Melanoma Cell Line WM9
Sample type genomic
 
Channel 1
Source name Melanoma Cell Line WM9
Organism Homo sapiens
Characteristics genotype: BRAF p.V600E
cell line: WM9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using Promega Wizard Genomic DNA Purification Kit following manufacturer's instructions.
Label Cy5
Label protocol Samples were labeled using Invitrogen's BioPrime Total for Agilent aCGH
 
Channel 2
Source name Promega Human Female
Organism Homo sapiens
Characteristics sample type: Female Control DNA from Promega
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using Promega Wizard Genomic DNA Purification Kit following manufacturer's instructions.
Label Cy3
Label protocol Samples were labeled using Invitrogen's BioPrime Total for Agilent aCGH
 
 
Hybridization protocol Hybridization was performed following Agilent's Oligonucleotide Array-Based CGH for Genomic DNA Analysis Protocol
Scan protocol Hybridized arrays were scanned using Agilent’s High-Resolution C Scanner
Data processing Data was extracted using Agilent Feature Extraction software
 
Submission date Jun 26, 2012
Last update date Aug 27, 2012
Contact name Katherine Nathanson
E-mail(s) knathans@exchange.upenn.edu
Organization name Perelman School of Medicine at the University of Pennsylvania
Street address 421 Curie Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19103
Country USA
 
Platform ID GPL9777
Series (1)
GSE38946 Array-based Comparative Genomic Hybridization of Melanoma Cell Lines

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -5.024094036e-002
2 0.000000000e+000
3 0.000000000e+000
4 2.307596891e-001
5 4.885692551e-003
6 -3.173645845e-001
7 -3.780919483e-002
8 -6.419077395e-002
9 4.301886406e-002
10 -1.628377777e-001
11 9.896171762e-002
12 -3.485271467e-001
13 2.120302282e-002
14 3.308497249e-001
15 -2.045129587e-001
16 -3.481322159e-001
17 -2.565427365e-001
18 -7.093433446e-001
19 -2.172036111e-001
20 1.481773512e-002

Total number of rows: 420288

Table truncated, full table size 9934 Kbytes.




Supplementary file Size Download File type/resource
GSM952590_WM9_13556_2.txt.gz 119.9 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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