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Sample GSM946545 Query DataSets for GSM946545
Status Public on Jun 11, 2012
Title PSU_ChipSeq_G1E-ER4_H3K9me3
Sample type SRA
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
antibody: H3K9me3
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: Abcam
antibody vendorid: ab8898
age: E0
age description: Embryonic day 0 (stem cell)
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM001921
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_24hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Reanalyzed by GSE61349
SRA SRX153185
BioSample SAMN01047988
Named Annotation GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepSignalRep1.bigWig
Named Annotation GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepSignalRep2.bigWig
Named Annotation GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputPk.broadPeak.gz 1.5 Mb (ftp)(http) BROADPEAK
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepPeaksRep1.broadPeak.gz 758.8 Kb (ftp)(http) BROADPEAK
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepPeaksRep2.broadPeak.gz 1.4 Mb (ftp)(http) BROADPEAK
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepSignalRep1.bigWig 3.8 Gb (ftp)(http) BIGWIG
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputRepSignalRep2.bigWig 5.0 Gb (ftp)(http) BIGWIG
GSM946545_mm9_wgEncodePsuHistoneG1eer4e2H3k09me3ME0S129InputSig.bigWig 5.3 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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