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Sample GSM946541 Query DataSets for GSM946541
Status Public on Jun 11, 2012
Title PSU_ChipSeq_Megakaryo_H3K9me3
Sample type SRA
Source name Megakaryo
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Megakaryo
cell organism: mouse
cell description: Megakaryocyte
cell sex: B
antibody: H3K9me3
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: Abcam
antibody vendorid: ab8898
age: E14.5
age description: Embryonic day 14.5
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM002352
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Mitch Weiss lab
Growth protocol Megakaryocyte_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (4)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51337 Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
SRA SRX153181
BioSample SAMN01047984
Named Annotation GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputRepSignalRep1.bigWig
Named Annotation GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputRepSignalRep2.bigWig
Named Annotation GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputSig.bigWig

Supplementary file Size Download File type/resource
GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputPk.broadPeak.gz 2.1 Mb (ftp)(http) BROADPEAK
GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputRepPeaksRep1.broadPeak.gz 1.5 Mb (ftp)(http) BROADPEAK
GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputRepPeaksRep2.broadPeak.gz 1.6 Mb (ftp)(http) BROADPEAK
GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputRepSignalRep1.bigWig 5.3 Gb (ftp)(http) BIGWIG
GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputRepSignalRep2.bigWig 5.2 Gb (ftp)(http) BIGWIG
GSM946541_mm9_wgEncodePsuHistoneMegakaryoH3k09me3BE14halfCd1InputSig.bigWig 5.9 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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