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Sample GSM946531 Query DataSets for GSM946531
Status Public on Jun 11, 2012
Title PSU_ChipSeq_G1E_H3K27me3
Sample type SRA
Source name G1E
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E
cell organism: mouse
cell description: Gata1- erythroid progenitor
cell sex: M
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001916
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Growth protocol G1E_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
SRA SRX153171
BioSample SAMN01047974
Named Annotation GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputRepSignalRep1.bigWig
Named Annotation GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputRepSignalRep2.bigWig
Named Annotation GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputPk.broadPeak.gz 929.9 Kb (ftp)(http) BROADPEAK
GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputRepPeaksRep1.broadPeak.gz 832.0 Kb (ftp)(http) BROADPEAK
GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputRepPeaksRep2.broadPeak.gz 820.9 Kb (ftp)(http) BROADPEAK
GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputRepSignalRep1.bigWig 2.9 Gb (ftp)(http) BIGWIG
GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputRepSignalRep2.bigWig 2.9 Gb (ftp)(http) BIGWIG
GSM946531_mm9_wgEncodePsuHistoneG1eH3k27me3ME0S129InputSig.bigWig 3.9 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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