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Sample GSM946527 Query DataSets for GSM946527
Status Public on Jun 11, 2012
Title PSU_ChipSeq_Megakaryo_H3K4me3
Sample type SRA
Source name Megakaryo
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Megakaryo
cell organism: mouse
cell description: Megakaryocyte
cell sex: B
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
age: E14.5
age description: Embryonic day 14.5
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM002352
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Mitch Weiss lab
Growth protocol Megakaryocyte_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (4)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51337 Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
SRA SRX153167
BioSample SAMN01047970
Named Annotation GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputRepSignalRep1.bigWig
Named Annotation GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputRepSignalRep2.bigWig
Named Annotation GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputSig.bigWig

Supplementary file Size Download File type/resource
GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputPk.broadPeak.gz 1.3 Mb (ftp)(http) BROADPEAK
GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputRepPeaksRep1.broadPeak.gz 1.6 Mb (ftp)(http) BROADPEAK
GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputRepPeaksRep2.broadPeak.gz 595.3 Kb (ftp)(http) BROADPEAK
GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputRepSignalRep1.bigWig 5.2 Gb (ftp)(http) BIGWIG
GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputRepSignalRep2.bigWig 4.3 Gb (ftp)(http) BIGWIG
GSM946527_mm9_wgEncodePsuHistoneMegakaryoH3k04me3BE14halfCd1InputSig.bigWig 5.6 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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