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Sample GSM946526 Query DataSets for GSM946526
Status Public on Jun 11, 2012
Title PSU_ChipSeq_G1E-ER4_H3K36me3
Sample type SRA
 
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: B
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001921
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_24hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
 
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (3)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Relations
SRA SRX153166
BioSample SAMN01047969
Named Annotation GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputRepSignalRep1.bigWig
Named Annotation GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputRepSignalRep2.bigWig
Named Annotation GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputPk.broadPeak.gz 503.7 Kb (ftp)(http) BROADPEAK
GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputRepPeaksRep1.broadPeak.gz 436.3 Kb (ftp)(http) BROADPEAK
GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputRepPeaksRep2.broadPeak.gz 609.2 Kb (ftp)(http) BROADPEAK
GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputRepSignalRep1.bigWig 3.5 Gb (ftp)(http) BIGWIG
GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputRepSignalRep2.bigWig 4.5 Gb (ftp)(http) BIGWIG
GSM946526_mm9_wgEncodePsuHistoneG1eer4e2H3k36me3BE0S129InputSig.bigWig 5.0 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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