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Sample GSM946521 Query DataSets for GSM946521
Status Public on Jun 11, 2012
Title PSU_ChipSeq_CH12_Input
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001923
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (2)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX153161
BioSample SAMN01047964
Named Annotation GSM946521_mm9_wgEncodePsuHistoneCh12InputFImmortal2a4bInputRepSignalRep1.bigWig
Named Annotation GSM946521_mm9_wgEncodePsuHistoneCh12InputFImmortal2a4bInputRepSignalRep2.bigWig
Named Annotation GSM946521_mm9_wgEncodePsuHistoneCh12InputFImmortal2a4bInputSig.bigWig

Supplementary file Size Download File type/resource
GSM946521_mm9_wgEncodePsuHistoneCh12InputFImmortal2a4bInputRepSignalRep1.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM946521_mm9_wgEncodePsuHistoneCh12InputFImmortal2a4bInputRepSignalRep2.bigWig 5.4 Gb (ftp)(http) BIGWIG
GSM946521_mm9_wgEncodePsuHistoneCh12InputFImmortal2a4bInputSig.bigWig 5.7 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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